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Report for CCDS68163.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
68163.1 Public Homo sapiens 20 CTCFL 24 110 108 CCDS HistoryNCBI Gene:140690Re-query CCDS DB by CCDS ID:68163.1Re-query CCDS DB by GeneID:140690See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 15, NCBI annotation release 105, Ensembl annotation release 74

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 68163.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000481655.2 ENSP00000476577.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000481655.2Link to Ensembl Protein Viewer:ENSP00000476577.1Re-query CCDS DB by Nucleotide ID:ENST00000481655Re-query CCDS DB by Protein ID:ENSP00000476577
Original member Current member EBI ENST00000608158.5 ENSP00000477165.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000608158.5Link to Ensembl Protein Viewer:ENSP00000477165.1Re-query CCDS DB by Nucleotide ID:ENST00000608158Re-query CCDS DB by Protein ID:ENSP00000477165
Original member Current member NCBI NM_001269051.2 NP_001255980.1 Accepted alive Link to Nucleotide Sequence:NM_001269051.2Link to Protein Sequence:NP_001255980.1Re-query CCDS DB by Nucleotide ID:NM_001269051Re-query CCDS DB by Protein ID:NP_001255980Link to BLAST:NP_001255980.1
Original member Current member NCBI NM_001269052.3 NP_001255981.1 Accepted alive Link to Nucleotide Sequence:NM_001269052.3Link to Protein Sequence:NP_001255981.1Re-query CCDS DB by Nucleotide ID:NM_001269052Re-query CCDS DB by Protein ID:NP_001255981Link to BLAST:NP_001255981.1
Original member Current member NCBI NM_001386996.1 NP_001373925.1 Accepted alive Link to Nucleotide Sequence:NM_001386996.1Link to Protein Sequence:NP_001373925.1Re-query CCDS DB by Nucleotide ID:NM_001386996Re-query CCDS DB by Protein ID:NP_001373925Link to BLAST:NP_001373925.1

Chromosomal Locations for CCDS 68163.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 57518602 57518891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 57519207 57519377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 57523068 57523278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 57523663 57524205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1215 nt):
ATGGCAGCCACTGAGATCTCTGTCCTTTCTGAGCAATTCACCAAGATCAAAGAACTCGAGTTGATGCCGG
AAAAAGGCCTGAAGGAGGAGGAAAAAGACGGAGTGTGCAGAGAGAAAGACCATCGGAGCCCTAGTGAGTT
GGAGGCCGAGCGTACCTCTGGGGCCTTCCAGGACAGCGTCCTGGAGGAAGAAGTGGAGCTGGTGCTGGCC
CCCTCGGAGGAGAGCGAGAAGTACATCCTGACCCTGCAGACGGTGCACTTCACTTCTGAAGCTGTGGAGT
TGCAGGATATGAGCTTGCTGAGCATACAGCAGCAAGAAGGGGTGCAGGTGGTGGTGCAACAGCCTGGCCC
TGGGTTGCTGTGGCTTGAGGAAGGGCCCCGGCAGAGCCTGCAGCAGTGTGTGGCCATTAGTATCCAGCAA
GAGCTGTACTCCCCGCAAGAGATGGAGGTGTTGCAGTTCCACGCTCTAGAGGAGAATGTGATGGTGGCCA
GTGAAGACAGTAAGTTAGCGGTGAGCCTGGCTGAAACTACTGGACTGATCAAGCTCGAGGAAGAGCAGGA
GAAGAACCAGTTATTGGCTGAAAGAACAAAGGAGCAGCTCTTTTTTGTGGAAACAATGTCAGGAGATGAA
AGAAGTGACGAAATTGTTCTCACAGTTTCAAATTCAAATGTGGAAGAACAAGAGGATCAACCTACAGCTG
GTCAAGCAGATGCTGAAAAGGCCAAATCTACAAAAAATCAAAGAAAGACAAAGGGAGCAAAAGGAACCTT
CCACTGTGATGTCTGCATGTTCACCTCTTCTAGAATGTCAAGTTTTAATCGTCATATGAAAACTCACACC
AGTGAGAAGCCTCACCTGTGTCACCTCTGCCTGAAAACCTTCCGTACGGTCACTCTGCTGCGGAACCATG
TTAACACCCACACAGGAACCAGGCCCTACAAGTGTAACGACTGCAACATGGCATTTGTCACCAGTGGAGA
ACTCGTCCGACACAGGCGCTATAAACATACTCATGAGAAACCCTTTAAATGTTCCATGTGCAAGTATGCC
AGTGTGGAGGTAAAGCCATTCTTGGACTTGAAGCTTCATGGCATCTTAGTAGAGGCTGCTGTACAAGTTA
CTCCAAGTGTAACTAACAGTAGAATCTGTTACAAACAGGCTTTTTATTATTCATATAAAATTTATGCAGG
AAATAATATGCATTCTCTTTTATGA

Translation (404 aa):
MAATEISVLSEQFTKIKELELMPEKGLKEEEKDGVCREKDHRSPSELEAERTSGAFQDSVLEEEVELVLA
PSEESEKYILTLQTVHFTSEAVELQDMSLLSIQQQEGVQVVVQQPGPGLLWLEEGPRQSLQQCVAISIQQ
ELYSPQEMEVLQFHALEENVMVASEDSKLAVSLAETTGLIKLEEEQEKNQLLAERTKEQLFFVETMSGDE
RSDEIVLTVSNSNVEEQEDQPTAGQADAEKAKSTKNQRKTKGAKGTFHCDVCMFTSSRMSSFNRHMKTHT
SEKPHLCHLCLKTFRTVTLLRNHVNTHTGTRPYKCNDCNMAFVTSGELVRHRRYKHTHEKPFKCSMCKYA
SVEVKPFLDLKLHGILVEAAVQVTPSVTNSRICYKQAFYYSYKIYAGNNMHSLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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