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Report for CCDS6701.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6701.1 Public Homo sapiens 9 SUSD3 24 110 108 CCDS HistoryNCBI Gene:203328Re-query CCDS DB by CCDS ID:6701.1Re-query CCDS DB by GeneID:203328See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6701.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000375472.8 ENSP00000364621.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000375472.8Link to Ensembl Protein Viewer:ENSP00000364621.3Re-query CCDS DB by Nucleotide ID:ENST00000375472Re-query CCDS DB by Protein ID:ENSP00000364621
Original member Current member NCBI NM_145006.4 NP_659443.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_145006.4Link to Protein Sequence:NP_659443.1Re-query CCDS DB by Nucleotide ID:NM_145006Re-query CCDS DB by Protein ID:NP_659443Link to BLAST:NP_659443.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659443.1 255 Q96L08-1 255 100% 0 0

Chromosomal Locations for CCDS 6701.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 93058743 93058830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 93075784 93075972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 93077846 93077993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 93079471 93079602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 93084537 93084747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (768 nt):
ATGCGCTGGGCGGCCGCCACCCTCCGTGGCAAGGCGAGGCCCCGGGGGCGGGCCGGGGTCACCACGCCTG
CCCCAGGGAACCGCACAGGCACGTGCGCTAAGCTGCGGCTACCCCCGCAAGCAACCTTCCAAGTCCTTCG
TGGCAATGGTGCTTCCGTGGGGACCGTGCTCATGTTCCGCTGCCCCTCCAACCACCAGATGGTGGGGTCT
GGGCTCCTCACCTGCACCTGGAAGGGGAGCATCGCTGAGTGGTCTTCAGGGTCCCCAGTGTGCAAACTGG
TGCCACCACACGAGACCTTTGGCTTCAAGGTGGCCGTGATCGCCTCCATTGTGAGCTGTGCCATCATCCT
GCTCATGTCCATGGCCTTCCTCACCTGCTGCCTCCTCAAGTGCGTGAAGAAGAGCAAGCGGCGGCGCTCC
AACAGGTCAGCCCAGCTGTGGTCCCAGCTGAAAGATGAGGACTTGGAGACGGTGCAGGCCGCATACCTTG
GCCTCAAGCACTTCAACAAACCCGTGAGCGGGCCCAGCCAGGCGCACGACAACCACAGCTTCACCACAGA
CCATGGTGAGAGCACCAGCAAGCTGGCCAGTGTGACCCGCAGCGTGGACAAGGACCCTGGGATCCCCAGA
GCTCTAAGCCTCAGTGGCTCCTCCAGCTCACCCCAAGCCCAGGTGATGGTGCACATGGCAAACCCCAGAC
AGCCCCTGCCTGCCTCTGGGCTGGCCACAGGAATGCCACAACAGCCCGCAGCATATGCCCTAGGGTGA

Translation (255 aa):
MRWAAATLRGKARPRGRAGVTTPAPGNRTGTCAKLRLPPQATFQVLRGNGASVGTVLMFRCPSNHQMVGS
GLLTCTWKGSIAEWSSGSPVCKLVPPHETFGFKVAVIASIVSCAIILLMSMAFLTCCLLKCVKKSKRRRS
NRSAQLWSQLKDEDLETVQAAYLGLKHFNKPVSGPSQAHDNHSFTTDHGESTSKLASVTRSVDKDPGIPR
ALSLSGSSSSPQAQVMVHMANPRQPLPASGLATGMPQQPAAYALG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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