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Report for CCDS666.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
666.1 Public Homo sapiens 1 TYW3 24 110 108 CCDS HistoryNCBI Gene:127253Re-query CCDS DB by CCDS ID:666.1Re-query CCDS DB by GeneID:127253See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 666.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370867.8 ENSP00000359904.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000370867.8Link to Ensembl Protein Viewer:ENSP00000359904.3Re-query CCDS DB by Nucleotide ID:ENST00000370867Re-query CCDS DB by Protein ID:ENSP00000359904
Original member Current member NCBI NM_138467.3 NP_612476.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_138467.3Link to Protein Sequence:NP_612476.1Re-query CCDS DB by Nucleotide ID:NM_138467Re-query CCDS DB by Protein ID:NP_612476Link to BLAST:NP_612476.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_612476.1 259 Q6IPR3-1 259 100% 0 0

Chromosomal Locations for CCDS 666.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 74733245 74733418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74736542 74736622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74738690 74738788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74748751 74748822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74752292 74752425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74763894 74764113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (780 nt):
ATGGATCGCAGCGCGGAGTTCAGGAAATGGAAGGCGCAATGTTTGAGCAAAGCGGACCTCAGCCGGAAGG
GCAGTGTTGACGAGGATGTGGTAGAGCTTGTGCAGTTTCTGAACATGCGAGATCAGTTTTTCACCACCAG
CTCCTGCGCTGGCCGCATCCTACTCCTTGACCGGGGTATAAATGGTTTTGAGGTTCAGAAACAAAACTGT
TGCTGGCTACTGGTTACACACAAACTTTGTGTAAAAGATGATGTGATTGTAGCTCTGAAGAAAGCAAATG
GTGATGCCACTTTGAAATTTGAACCATTTGTTCTTCATGTGCAGTGTCGACAATTGCAGGATGCACAGAT
TCTGCATTCCATGGCAATAGATTCTGGTTTCAGGAACTCTGGCATAACGGTGGGAAAGAGAGGAAAAACT
ATGTTGGCTGTCCGGAGTACACATGGCTTAGAAGTTCCATTAAGCCATAAGGGAAAACTGATGGTGACAG
AGGAATATATTGACTTCCTGTTAAATGTGGCAAATCAAAAAATGGAGGAAAACAAGAAAAGAATTGAGAG
GTTTTACAACTGCCTACAGCATGCTTTGGAAAGGGAAACGATGACTAACTTACATCCCAAGATCAAAGAG
AAAAATAACTCATCATATATTCATAAGAAAAAAAGAAACCCAGAAAAAACACGTGCCCAGTGTATTACTA
AAGAAAGTGATGAAGAACTTGAAAATGATGATGATGATGATCTAGGAATCAATGTTACCATCTTCCCTGA
AGATTACTAA

Translation (259 aa):
MDRSAEFRKWKAQCLSKADLSRKGSVDEDVVELVQFLNMRDQFFTTSSCAGRILLLDRGINGFEVQKQNC
CWLLVTHKLCVKDDVIVALKKANGDATLKFEPFVLHVQCRQLQDAQILHSMAIDSGFRNSGITVGKRGKT
MLAVRSTHGLEVPLSHKGKLMVTEEYIDFLLNVANQKMEENKKRIERFYNCLQHALERETMTNLHPKIKE
KNNSSYIHKKKRNPEKTRAQCITKESDEELENDDDDDLGINVTIFPEDY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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