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Report for CCDS65253.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
65253.1 Public Homo sapiens X SLC35A2 24 110 108 CCDS HistoryNCBI Gene:7355Re-query CCDS DB by CCDS ID:65253.1Re-query CCDS DB by GeneID:7355See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 65253.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000635589.1 ENSP00000489197.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000635589.1Link to Ensembl Protein Viewer:ENSP00000489197.1Re-query CCDS DB by Nucleotide ID:ENST00000635589Re-query CCDS DB by Protein ID:ENSP00000489197
Original member Current member NCBI NM_001282649.2 NP_001269578.1 Accepted alive Link to Nucleotide Sequence:NM_001282649.2Link to Protein Sequence:NP_001269578.1Re-query CCDS DB by Nucleotide ID:NM_001282649Re-query CCDS DB by Protein ID:NP_001269578Link to BLAST:NP_001269578.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001269578.1 332 P78381-5 332 100% 0 0

Chromosomal Locations for CCDS 65253.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 48904727 48905482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48906392 48906543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48911546 48911636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (999 nt):
ATGGCAGCGGTTGGGGCTGGTGGTTCCACCGCGGCGCCCGGGCCAGGGGCGGTTTCCGCGGGTGCATTGG
AGCCGGGGACCGCCAGTGCGGGTAACGTGAAGCACCTGGTTCTCTTCCTCCATGAGGCTGTCCTGGTGCA
GTATGTGGACACGCTCAAGCTCGCAGTGCCCTCTCTCATCTACACCTTGCAGAATAACCTCCAGTATGTT
GCCATCTCTAACCTACCAGCTGCCACTTTCCAGGTGACATACCAGCTGAAGATCCTGACCACAGCGCTGT
TCTCCGTGCTCATGCTGAATCGCAGCCTTTCCCGGCTGCAGTGGGCCTCCCTGCTGCTCCTCTTCACTGG
CGTCGCCATTGTCCAGGCACAGCAAGCCGGTGGGGGAGGCCCACGGCCACTGGATCAGAACCCTGGGGCA
GGCCTGGCAGCCGTCGTGGCCTCCTGTCTCTCCTCCGGCTTCGCAGGTGTCTACTTTGAGAAGATCCTCA
AAGGCAGCTCAGGCTCCGTGTGGCTGCGCAACCTGCAACTGGGCCTCTTCGGCACAGCACTGGGCCTGGT
GGGGCTCTGGTGGGCTGAGGGTACCGCCGTGGCCACCCGTGGTTTCTTTTTTGGGTACACACCTGCTGTC
TGGGGCGTGGTGCTCAACCAGGCCTTCGGCGGGCTACTGGTGGCTGTGGTTGTCAAGTACGCTGACAATA
TCCTCAAGGGCTTTGCCACCTCCCTGTCCATTGTGCTGTCCACTGTTGCCTCCATTCGCCTCTTTGGCTT
CCACGTGGACCCATTATTTGCCCTTGGCGCTGGACTCGTCATTGGTGCTGTCTACCTCTACAGCCTTCCC
CGAGGTGCAGCCAAAGCCATAGCCTCTGCCTCTGCCTCCGCCTCCGGGCCCTGCGTTCACCAGCAGCCTC
CCGGGCAGCCACCACCACCGCAGCTGTCTTCCCACCGTGGAGACCTCATCACGGAGCCCTTTCTGCCAAA
GTCAGTGCTGGTGAAGTGA

Translation (332 aa):
MAAVGAGGSTAAPGPGAVSAGALEPGTASAGNVKHLVLFLHEAVLVQYVDTLKLAVPSLIYTLQNNLQYV
AISNLPAATFQVTYQLKILTTALFSVLMLNRSLSRLQWASLLLLFTGVAIVQAQQAGGGGPRPLDQNPGA
GLAAVVASCLSSGFAGVYFEKILKGSSGSVWLRNLQLGLFGTALGLVGLWWAEGTAVATRGFFFGYTPAV
WGVVLNQAFGGLLVAVVVKYADNILKGFATSLSIVLSTVASIRLFGFHVDPLFALGAGLVIGAVYLYSLP
RGAAKAIASASASASGPCVHQQPPGQPPPPQLSSHRGDLITEPFLPKSVLVK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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