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Report for CCDS64277.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
64277.1 Public Homo sapiens 5 YIPF5 24 110 108 CCDS HistoryNCBI Gene:81555Re-query CCDS DB by CCDS ID:64277.1Re-query CCDS DB by GeneID:81555See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 64277.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000513112.5 ENSP00000425422.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000513112.5Link to Ensembl Protein Viewer:ENSP00000425422.1Re-query CCDS DB by Nucleotide ID:ENST00000513112Re-query CCDS DB by Protein ID:ENSP00000425422
Original member Current member NCBI NM_001271732.2 NP_001258661.1 Accepted alive Link to Nucleotide Sequence:NM_001271732.2Link to Protein Sequence:NP_001258661.1Re-query CCDS DB by Nucleotide ID:NM_001271732Re-query CCDS DB by Protein ID:NP_001258661Link to BLAST:NP_001258661.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258661.1 203 Q969M3-2 203 100% 0 0

Chromosomal Locations for CCDS 64277.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 144160397 144160559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144162218 144162399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144164111 144164256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144165432 144165552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (612 nt):
ATGATGCAGCCACAACAGCCATACACCGGGCAGATTTACCAGCCAACTCAGGCATATACTCCAGCTTCAC
CTCAGCCTTTCTATGGAAACAACTTTGAGGATGAGCCACCTTTATTAGAAGAGTTAGGTATCAATTTTGA
CCACATCTGGCAAAAAACACTAACAGTATTACATCCGTTAAAAGTAGCAGATGGCAGCATCATGAATGAA
ACTGATTTGGCAGGTCCAATGGTTTTTTGCCTTGCTTTTGGAGCCACATTGCTACTGGCTGGCAAAATCC
AGTTTGGCTATGTATACGGGATCAGTGCAATTGGATGTCTAGGAATGTTTTGTTTATTAAACTTAATGAG
TATGACAGGTGTTTCATTTGGTTGTGTGGCAAGTGTCCTTGGATATTGTCTTCTGCCCATGATCCTACTT
TCCAGCTTTGCAGTGATATTTTCTTTGCAAGGAATGGTAGGAATCATTCTCACTGCTGGGATTATTGGAT
GGTGTAGTTTTTCTGCTTCCAAAATATTTATTTCTGCATTAGCCATGGAAGGACAGCAACTTTTAGTAGC
ATATCCTTGCGCTTTGTTATATGGAGTCTTTGCCCTGATTTCCGTCTTTTGA

Translation (203 aa):
MMQPQQPYTGQIYQPTQAYTPASPQPFYGNNFEDEPPLLEELGINFDHIWQKTLTVLHPLKVADGSIMNE
TDLAGPMVFCLAFGATLLLAGKIQFGYVYGISAIGCLGMFCLLNLMSMTGVSFGCVASVLGYCLLPMILL
SSFAVIFSLQGMVGIILTAGIIGWCSFSASKIFISALAMEGQQLLVAYPCALLYGVFALISVF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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