NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS64062.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
64062.1 Public Homo sapiens 4 ELF2 24 110 108 CCDS HistoryNCBI Gene:1998Re-query CCDS DB by CCDS ID:64062.1Re-query CCDS DB by GeneID:1998See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 64062.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000510408.5 ENSP00000426997.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000510408.5Link to Ensembl Protein Viewer:ENSP00000426997.1Re-query CCDS DB by Nucleotide ID:ENST00000510408Re-query CCDS DB by Protein ID:ENSP00000426997
Original member Current member NCBI NM_001276458.3 NP_001263387.1 Accepted alive Link to Nucleotide Sequence:NM_001276458.3Link to Protein Sequence:NP_001263387.1Re-query CCDS DB by Nucleotide ID:NM_001276458Re-query CCDS DB by Protein ID:NP_001263387Link to BLAST:NP_001263387.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001263387.1 521 Q15723-2 521 100% 0 0

Chromosomal Locations for CCDS 64062.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 139058983 139059607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139060324 139060674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139061865 139062057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139067684 139067770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139071866 139072003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139073454 139073567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139084133 139084190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1566 nt):
ATGGCGACGTCTCTGCATGAGGGACCCACGAACCAGCTGGATCTGCTCATCCGGGCCGTGGAAGCATCAG
TTCACAGCAGTAATGCACACTGTACAGATAAGACAATTGAAGCTGCTGAAGCCCTGCTTCATATGGAATC
TCCTACCTGCTTGAGGGATTCAAGAAGTCCTGAATTCATCCATGCTGCTATGAGGCCAGATGTCATTACA
GAAACTGTAGTGGAGGTGTCAACTGAAGAGTCTGAACCCATGGATACCTCTCCTATTCCAACATCACCAG
ATAGCCATGAACCAATGAAAAAGAAAAAAGTTGGCCGTAAACCAAAGACCCAGCAATCACCAATTTCCAA
TGGGTCTCCTGAGTTAGGTATAAAGAAGAAACCAAGAGAAGGAAAAGGAAACACAACCTATTTGTGGGAG
TTTCTTTTAGATCTACTTCAAGATAAAAATACTTGTCCCAGGTATATTAAATGGACTCAGAGAGAAAAAG
GCATATTCAAGCTGGTGGATTCAAAGGCTGTCTCTAAGCTTTGGGGAAAGCATAAGAACAAACCAGACAT
GAACTATGAAACCATGGGACGAGCTTTGAGATACTACTACCAAAGGGGAATTCTTGCAAAGGTTGAAGGA
CAGAGGCTTGTATATCAGTTCAAGGATATGCCGAAAAACATAGTGGTCATAGATGATGACAAAAGTGAAA
CCTGTAATGAAGATTTAGCAGGAACTACTGATGAAAAATCATTAGAACGAGTGTCACTGTCTGCAGAAAG
TCTCCTGAAAGCAGCATCCTCTGTTCGCAGTGGAAAAAATTCATCCCCTATAAACTGCTCCAGAGCAGAG
AAGGGTGTAGCTAGAGTTGTGAATATCACTTCCCCTGGGCACGATGCTTCATCCAGGTCTCCTACTACCA
CTGCATCTGTGTCAGCAACAGCAGCTCCAAGGACAGTTCGTGTGGCAATGCAGGTACCTGTTGTAATGAC
ATCATTGGGTCAGAAAATTTCAACTGTGGCAGTTCAGTCAGTTAATGCAGGTGCACCATTAATAACCAGC
ACTAGTCCAACAACAGCGACCTCTCCAAAGGTAGTCATTCAGACAATCCCTACTGTGATGCCAGCTTCTA
CTGAAAATGGAGACAAAATCACCATGCAGCCTGCCAAAATTATTACCATCCCAGCTACACAGCTTGCACA
GTGTCAACTGCAGACAAAGTCAAATCTGACTGGATCAGGAAGCATTAACATTGTTGGAACCCCATTGGCT
GTGAGAGCACTTACCCCTGTTTCAATAGCCCATGGTACACCTGTAATGAGACTATCAATGCCTACTCAGC
AGGCATCTGGCCAGACTCCTCCTCGAGTTATCAGTGCAGTCATAAAGGGGCCAGAGGTTAAATCGGAAGC
AGTGGCAAAAAAGCAAGAACATGATGTGAAAACTTTGCAGCTAGTAGAAGAAAAACCAGCAGATGGAAAT
AAGACAGTGACCCACGTAGTGGTTGTCAGTGCGCCTTCAGCTATTGCCCTTCCTGTAACTATGAAAACAG
AAGGACTAGTGACATGTGAGAAATAA

Translation (521 aa):
MATSLHEGPTNQLDLLIRAVEASVHSSNAHCTDKTIEAAEALLHMESPTCLRDSRSPEFIHAAMRPDVIT
ETVVEVSTEESEPMDTSPIPTSPDSHEPMKKKKVGRKPKTQQSPISNGSPELGIKKKPREGKGNTTYLWE
FLLDLLQDKNTCPRYIKWTQREKGIFKLVDSKAVSKLWGKHKNKPDMNYETMGRALRYYYQRGILAKVEG
QRLVYQFKDMPKNIVVIDDDKSETCNEDLAGTTDEKSLERVSLSAESLLKAASSVRSGKNSSPINCSRAE
KGVARVVNITSPGHDASSRSPTTTASVSATAAPRTVRVAMQVPVVMTSLGQKISTVAVQSVNAGAPLITS
TSPTTATSPKVVIQTIPTVMPASTENGDKITMQPAKIITIPATQLAQCQLQTKSNLTGSGSINIVGTPLA
VRALTPVSIAHGTPVMRLSMPTQQASGQTPPRVISAVIKGPEVKSEAVAKKQEHDVKTLQLVEEKPADGN
KTVTHVVVVSAPSAIALPVTMKTEGLVTCEK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH