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Report for CCDS62571.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
62571.1 Public Homo sapiens 19 STX10 24 110 108 CCDS HistoryNCBI Gene:8677Re-query CCDS DB by CCDS ID:62571.1Re-query CCDS DB by GeneID:8677See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 62571.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000343587.9 ENSP00000339350.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000343587.9Link to Ensembl Protein Viewer:ENSP00000339350.4Re-query CCDS DB by Nucleotide ID:ENST00000343587Re-query CCDS DB by Protein ID:ENSP00000339350
Original member Current member NCBI NM_001271611.2 NP_001258540.1 Accepted alive Link to Nucleotide Sequence:NM_001271611.2Link to Protein Sequence:NP_001258540.1Re-query CCDS DB by Nucleotide ID:NM_001271611Re-query CCDS DB by Protein ID:NP_001258540Link to BLAST:NP_001258540.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258540.1 200 O60499-2 200 100% 0 0

Chromosomal Locations for CCDS 62571.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 13144410 13144486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 13144577 13144671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 13144764 13144870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 13145288 13145385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 13149573 13149593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 13149728 13149897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 13150139 13150173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (603 nt):
ATGTCTCTCGAAGACCCCTTTTTTGTAGTCCGAGGCGAGGTGCAGAAGGCGGTGAACACGGCCCGCGGGC
TGTACCAGCGCTGGTGCGAGCTCCTGCAGGAAAGCGCGGCGGTCGGACGCGAGGAGCTGGACTGGACGAC
CAATGAGCTGCGGAATGGCCTGCGCAGCATCGAGTGGGACCTCGAGGACCTGGAAGAGACCATCGGTATA
GTGGAAGCCAACCCAGGCAAGCCAGCTGCCCAGAAGTCACCCAGCGACCTGCTGGATGCCAGCGCAGTCT
CGGCCACATCTCGCTACATCGAGGAGCAGCAGGCCACACAGCAGCTGATCATGGATGAACAGGATCAACA
GCTGGAGATGGTGTCTGGGAGCATCCAGGTTCTGAAGCACATGTCCGGCCGCGTTGGAGAAGAGCTGGAC
GAGCAGGGCATCATGCTGGATGCCTTCGCCCAAGAGATGGACCACACCCAGTCCCGCATGGACGGGGTCC
TCAGGAAGTTGGCCAAAGTATCCCACATGACGAGTGACCGCCGACAGTGGTGTGCCATCGCCGTGCTAGT
GGGGGTGCTTCTCCTCGTTCTCATCTTACTATTCTCTCTCTGA

Translation (200 aa):
MSLEDPFFVVRGEVQKAVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWDLEDLEETIGI
VEANPGKPAAQKSPSDLLDASAVSATSRYIEEQQATQQLIMDEQDQQLEMVSGSIQVLKHMSGRVGEELD
EQGIMLDAFAQEMDHTQSRMDGVLRKLAKVSHMTSDRRQWCAIAVLVGVLLLVLILLFSL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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