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Report for CCDS6197.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6197.2 Public Homo sapiens 8 MCMDC2 24 110 108 CCDS HistoryNCBI Gene:157777Re-query CCDS DB by CCDS ID:6197.2Re-query CCDS DB by GeneID:157777See the combined annotation on chromosome 8 in Sequence Viewer

Public Note for CCDS 6197.1
The coding region has been updated to represent an alternate splice pattern, resulting in an N-terminal extension and a longer and different C-terminus that is more supported by the available transcript and protein data. The update completes a predicted C-terminal MCM (minichromosome maintenance proteins) domain.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 6197.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000422365.7 ENSP00000413632.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000422365.7Link to Ensembl Protein Viewer:ENSP00000413632.2Re-query CCDS DB by Nucleotide ID:ENST00000422365Re-query CCDS DB by Protein ID:ENSP00000413632
Original member Current member NCBI NM_173518.5 NP_775789.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_173518.5Link to Protein Sequence:NP_775789.3Re-query CCDS DB by Nucleotide ID:NM_173518Re-query CCDS DB by Protein ID:NP_775789Link to BLAST:NP_775789.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775789.3 681 Q4G0Z9-1 681 100% 0 0

Chromosomal Locations for CCDS 6197.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 66874141 66874234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 66874326 66874456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 66874527 66874586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 66877349 66877544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 66878574 66878696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 66878815 66878919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 66880849 66880974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 66883757 66883994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 66890865 66891070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 66896170 66896336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 66896780 66896959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 66901206 66901348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 66905226 66905335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 66919003 66919169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2046 nt):
ATGTCAAATCTAAAAATGAAAGAGGCGGCCCTCATCTATCTTGACAGAAGTGGAGGCCTCCAAAAGTTTA
TAGATGATTGCAAGTACTACAATGATTCAAAACAAAGCTATGCTGTCTATCGATTCAAAATTTTAATAAA
TCCCTCTGATGTTGTTGAATTAGATGCTGAGCTTGGAAATCACATTTTACACCAACCTTTAAAAGCTGCT
GAAGTCTTTCAATCAGTCTGTTTTATTGCTGTTAAGACTCTCTCATTAATTGGACAATTGCAGACTGAAA
CGCAAATTAATATAGTGCTGAAATTAACACATTTACCTCCCCTGCCAAGTTATGGTCTTGATCTTTGTGA
GTTTCCACTTGATTATACATCTCAGAGATTTTATATGATGCAAGGAATTGTGATTGCAATGACAACTATA
ACCAAGTATACACAAGGGGCAAGATTTCTTTGTTCAGATGAAGCATGCCCTCTTTCAAAAGGATTTCAGT
ATATAAGAGTGCATGTGCCTGGTGCTACAGAATCTGCAACGATAAGAAATGACTTTTTGTGTAATCTATG
TGCATCTTCACTTCAAGAAGACAGAAAATTTAGAGTACTTGGTGATAAACAAATAGTTGAAATAATTGCC
ACAAAGGCACTTCGTGCTTTTCAAGGATATTCTAACAACCAGCCATTTAGGTTTCAATCACTTACAATTT
TCCTAAGAGATGAATCAGTGAATAAAATGAATATAGGAAATGAATATAAAATTATTGGAATTCCAACCTG
TGTAAAAACCTCACAAACTGCTGTCTGTATAGAAGCAAATAGCATAACTTTTTGTAATTCAAAAGTTCCT
TCAGGAATTAGTGACAACTTCAGGTGTCTCCTCTCCTTAACTTCCAGCTCATGCTGGAAGTTTACAGCAA
TACTTGCCAATATCTTTGCATCACAAATTACCCCTCCTGGGACTTACAATTTGCTCAAGCTCTGTTTGTT
GATGAGTCTAGTACAGACAACTGACCGTAACAAGGAACTGGAAGATTGCCTGGATATTTTAATTATAACA
AGTGATACTCTACTCATAGACAGGCTTCTGAATTTTAGCATAAACCTTGTCCCCCGTGGTATACGTCATC
TAGTCTCTACTGAAATTTTTCCCACTCTATCCAGGAATAAGTATGGAACTGGAGCAGTTAGCATTCAGGC
TGGCAGTGCTTTGCTAGCTAAAGGTGGTATCTGCTTTATAGGAGACTTGGCTTCACACAAAAAAGATAAA
CTTGAACAGCTTCAAACAGTTCTGGAGAGCAGAAGCATCACAGTGTACATCCCAGGAAAGAAGTTTGGGG
AGGATATTGATCAACAGATGACTTTTCCAGTTCAGTGCAGTTTTTGGTCTTTTGTTGATGTGGATTCATC
TTCAAGGAGAAATGCACAGAAAATCAACACTCTAATTGGTCAGATGGATTGCAGTTTGATTCCAGCTAAC
CTTGTGGAGGCATTTGGTTTATTGATTAACTGCAACGAGTCATCTCCCTGCCACCCATTTCTTCCTACTG
TGCAACACACTTTGAACAAAGCCATTAATCCTGAAGGGCTGTTTTATGCGGCTTCTAGACAGTTCACAAC
TGAAGATTTTGAAAAGCTATTGGCTTTTGCAAAGAATTTGAATGTAGAATTCAGCTTGGAAGCAGAAAGA
ATGACCCATGGCTATTATCTAGCAAGTCGCAGAATCAGAACAGGCTCTGTATGTGGATCAAAGCTGTCAG
CATCTGCATTAAAATATCTCGTTTTCCTATCTGAAGCCCATGCACGACTGAACTTAAGGAACAAAGTGCT
TAAAGAAGATGTGCTGATTGCAGCCTTACTATTTGAAACATCCCTCACATTGAAATATGGGGCCACTGTA
TTTTGTGTTGCTCCGAATGCAGTATTTCCATTTGAACTGTATAATGAAGAATACTTAGAGCAAAGGGATC
TCTATCTGACTCAGTGCCAACAACAGCTGGAACAATTTATTGCCACATATGGACCTGGGACAACTATTTT
CTCTAGTGATGAATAA

Translation (681 aa):
MSNLKMKEAALIYLDRSGGLQKFIDDCKYYNDSKQSYAVYRFKILINPSDVVELDAELGNHILHQPLKAA
EVFQSVCFIAVKTLSLIGQLQTETQINIVLKLTHLPPLPSYGLDLCEFPLDYTSQRFYMMQGIVIAMTTI
TKYTQGARFLCSDEACPLSKGFQYIRVHVPGATESATIRNDFLCNLCASSLQEDRKFRVLGDKQIVEIIA
TKALRAFQGYSNNQPFRFQSLTIFLRDESVNKMNIGNEYKIIGIPTCVKTSQTAVCIEANSITFCNSKVP
SGISDNFRCLLSLTSSSCWKFTAILANIFASQITPPGTYNLLKLCLLMSLVQTTDRNKELEDCLDILIIT
SDTLLIDRLLNFSINLVPRGIRHLVSTEIFPTLSRNKYGTGAVSIQAGSALLAKGGICFIGDLASHKKDK
LEQLQTVLESRSITVYIPGKKFGEDIDQQMTFPVQCSFWSFVDVDSSSRRNAQKINTLIGQMDCSLIPAN
LVEAFGLLINCNESSPCHPFLPTVQHTLNKAINPEGLFYAASRQFTTEDFEKLLAFAKNLNVEFSLEAER
MTHGYYLASRRIRTGSVCGSKLSASALKYLVFLSEAHARLNLRNKVLKEDVLIAALLFETSLTLKYGATV
FCVAPNAVFPFELYNEEYLEQRDLYLTQCQQQLEQFIATYGPGTTIFSSDE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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