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Report for CCDS60147.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
60147.1 Public Homo sapiens 1 LDLRAD1 24 110 108 CCDS HistoryNCBI Gene:388633Re-query CCDS DB by CCDS ID:60147.1Re-query CCDS DB by GeneID:388633See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 60147.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000420619.5 ENSP00000411017.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000420619.5Link to Ensembl Protein Viewer:ENSP00000411017.1Re-query CCDS DB by Nucleotide ID:ENST00000420619Re-query CCDS DB by Protein ID:ENSP00000411017
Original member Current member NCBI NM_001276392.2 NP_001263321.1 Accepted alive Link to Nucleotide Sequence:NM_001276392.2Link to Protein Sequence:NP_001263321.1Re-query CCDS DB by Nucleotide ID:NM_001276392Re-query CCDS DB by Protein ID:NP_001263321Link to BLAST:NP_001263321.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001263321.1 166 Q5T700-2 166 100% 0 0

Chromosomal Locations for CCDS 60147.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 54008982 54009130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 54010282 54010410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 54012143 54012280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 54018092 54018176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (501 nt):
ATGCAGGGAACCCGTGCTGAGCTCTCTGCACACAGCCCCAGTCGGGCAGCAGGAAACCGAAGACATGAAC
AA
GGTCTTCCCCCAGGAGCCCAAGCTTGTATAACACTGACAAACAGGACAGGCTTCTTGTGCCATGACCA
G
AGGAGCTGCATTCCAGCCAGTGGGGTCTGTGATGGCGTTCGCACCTGTACCCACGGCGAGGACGAGGAT
GAG
AGCTTGTGCCGAGATGTGCCCCAGAGCCTCCCCCACTTCCTTGTGGCCCACTGTGGAGACCCGGCCT
CC
TGGATCTACTCAGACCAAAAATGTGATGGCACTAACAACTGCGGGGACTGTTCAGATGAACTGAGCCC
A
GTAACTGTGTGCCCACCCTGCGGCCCTGGGTGGTGGCGCTGTCCTTCAACCTTCTTCAAGTACTGCGAC
TGT
ATACCGAGGCATCTCTGCCGCGACCATGTACAGCACTGCTCCGACTGGTCCGATGAGTATGCCTGTC
CC
GGACCCTGA


Translation (166 aa):
MQGTRAELSAHSPSRAAGNRRHEQGLPPGAQACITLTNRTGFLCHDQRSCIPASGVCDGVRTCTHGEDED
E
SLC
RDVPQSLPHFLVAHCGDPASWIYSDQKCDGTNNCGDCSDELSPVTVCPPCGPGWWRCPSTFFKYCD
C
IPRHLCRDHVQHCSDWSDEYACPGP




Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
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