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Report for CCDS60066.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
60066.1 Public Homo sapiens 1 SPOCD1 24 110 108 CCDS HistoryNCBI Gene:90853Re-query CCDS DB by CCDS ID:60066.1Re-query CCDS DB by GeneID:90853See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 60066.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000533231.5 ENSP00000435851.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000533231.5Link to Ensembl Protein Viewer:ENSP00000435851.1Re-query CCDS DB by Nucleotide ID:ENST00000533231Re-query CCDS DB by Protein ID:ENSP00000435851
Original member Current member NCBI NM_001281987.3 NP_001268916.1 Accepted alive Link to Nucleotide Sequence:NM_001281987.3Link to Protein Sequence:NP_001268916.1Re-query CCDS DB by Nucleotide ID:NM_001281987Re-query CCDS DB by Protein ID:NP_001268916Link to BLAST:NP_001268916.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001268916.1 1203 Q6ZMY3-2 1203 100% 0 0

Chromosomal Locations for CCDS 60066.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 31790603 31791252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 31792215 31792401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 31792678 31792767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 31793278 31793428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 31793747 31793897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 31794124 31794235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 31796590 31796715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 31798207 31798323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 31798442 31798601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 31799401 31799485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 31799809 31799863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 31800016 31800141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 31800441 31800617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 31801664 31801705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 31813951 31815333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3612 nt):
ATGTCCCAGGCGGGGGACGTAGAAGGCCCCAGCACAGGAGACCCTGTGCTCAGTCCCCAACACAACTGTG
AGCTTTTACAGAACATGGAAGGAGCCAGCTCCATGCCAGGCCTGTCACCAGATGGGCCGGGAGCAAGCTC
TGGGCCCGGAGTCAGGGCTGGCAGCAGAAGGAAGATCCCCAGGAAGGAGGCCCTTCGAGGTGGCAGCTCC
CGGGCTGCAGGTGCTGCTGAGGTCCGGCCAGGGGTCTTGGAGCTGCTAGCTGTGGTACAGAGCCGGGGCT
CGATGCTGGCTCCTGGGCTCCACATGCAGCTGCCCTCGGTGCCTACTCAGGGGAGAGCTCTGACCTCCAA
GAGGCTCCAGGTTTCTCTGTGTGACATCTTAGATGACAGTTGCCCCAGGAAACTTTGTAGCAGGTCTGCT
GGCCTCCCAGAGAGAGCTCTGGCCTGCAGGGAGAGGCTTGCAGGAGTGGAGGAGGTGAGCTGCCTCAGGC
CCAGGGAGGCCAGAGACGGTGGAATGAGTTCTCCAGGGTGTGACAGAAGAAGCCCCACACTCAGCAAAGA
GGAGCCCCCTGGAAGGCCCCTGACATCCTCACCAGACCCAGTCCCTGTGAGGGTAAGAAAGAAATGGAGG
AGGCAAGGGGCTCATTCAGAGTGTGAGGAAGGGGCTGGTGACTTCCTGTGGCTTGATCAGAGCCCTCGTG
GGGACAACCTCCTGTCTGTGGGAGACCCTCCCCAAGTTGCTGACCTGGAGTCCTTGGGAGGCCCTTGCAG
ACCTCCCTCTCCAAAAGACACTGGGTCTGGGCCTGGAGAGCCAGGTGGAAGTGGGGCAGGATGTGCCTCA
GGGACTGAGAAATTTGGATATTTGCCCGCTACAGGGGATGGGCCCCAGCCAGGCAGCCCCTGTGGCCCTG
TCGGGTTCCCAGTGCCCAGTGGAGGGGAGTCCCTCAGTTCAGCTGCACAGGCTCCTCCACAGAGCGCAGC
ACTGTGCCTGGGGGCGTCAGCACAGGCCTCTGCAGAGCAGCAAGAAGCTGTGTGTGTCGTGCGGACTGGC
AGCGATGAAGGCCAGGCTCCAGCACAGGACCAGGAGGAGCTGGAGGCCAAGGCTCAGCCAGCTTCCAGGG
GAAGGCTGGAGCAAGGACTCGCTGCCCCCGCTGACACCTGTGCCAGCTCCCGGGAGCCCTTGGGCGGCCT
CAGCTCCTCCCTGGATACTGAAGCCAGCAGGGCCTGCTCAGGCCCATTCATGGAGCAGAGAAGATCCAAG
GGCACTAAGAACCTGAAGAAAGGTCCAGTGCCCTGTGCCCAAGACCGGGGCACAGACAGAAGCTCAGACA
ACTCCCACCAGGACAGGCCAGAGGAACCCAGCCCAGGAGGCTGCCCCAGACTGGAGGAAGTGAAAATACC
CCATGGAGTGAAGCTTGTGTGCTACCTGGGTTCCGGGCCAGTGATCCAGCTCCTGGGGGCCATCAGCCAC
GGCCAGGCAGGGGGGCAGCTGCCACCAAAGCTGGAGGTTCTAGAGGACTTGATGGAGGTCAGCTCACCCT
CACCTGCCCAGAGGCTCAGAAGGAAGAAAAGGCCCATGGTGCAGGGCCCTGCTGGGTGCCAGGTTTTCCA
GCCTTCTCCTTCAGGAGGCACAGCAGGGGACCCTGGTGGCCTCTCTGACCCCTTCTACCCTCCAAGAAGC
GGTTCCCTGGCCCTTGGCGACCCCAGCTCGGACCCTGCATGTTCCCAGAGTGGCCCAATGGAGGCTGAAG
AGGATTCTCTTCCGGAGCAGCCAGAGGACTCAGCTCAGCTCCAACAGGAGAAGCCATCCCTGTATATTGG
GGTGCGGGGCACTGTTGTCCGTTCCATGCAGGAGGTACTATGGACTCGCCTTCGGGAGCTCCCAGACCCA
GTGCTGAGTGAGGAGGTGGTGGAGGGCATTGCTGCTGGCATTGAGGCAGCCCTCTGGGACCTGACACAAG
GCACCAATGGCCGGTACAAGACCAAGTATCGCAGCCTGCTGTTCAACCTGCGGGACCCCAGGAACCTGGA
CTTGTTTCTCAAAGTGGTTCATGGAGATGTCACCCCCTACGACCTGGTGCGGATGAGCTCGATGCAGCTG
GCCCCCCAGGAGCTGGCCCGCTGGCGGGACCAGGAGGAGAAAAGGGGCCTGAATATCATTGAGCAGCAAC
AGAAGGAGCCGTGCAGACTTCCAGCCTCCAAAATGACCCACAAGGGCGAAGTGGAGATTCAGCGGGACAT
GGACCAGACACTGACCCTGGAGGATCTGGTGGGACCGCAGATGTTCATGGACTGCAGCCCACAGGCCCTG
CCCATCGCATCAGAGGACACCACGGGGCAGCATGACCACCACTTCTTAGACCCCAACTGCCACATCTGCA
AGGACTGGGAGCCCTCGAATGAGCTGCTAGGCTCCTTCGAAGCCGCCAAGAGCTGCGGGGACAATATCTT
CCAGAAAGCCCTAAGCCAAACTCCTATGCCTGCTCCAGAGATGCCCAAAACCAGGGAGTTGTCTCCCACG
GAACCACAGGACAGGGTCCCTCCATCTGGGCTCCATGTGCCTGCTGCACCCACAAAGGCCCTGCCCTGCC
TGCCACCCTGGGAAGGTGTTCTGGACATGTTCTCCATCAAGCGGTTCCGGGCCAGGGCCCAGCTGGTCTC
GGGACACAGCTGTCGGCTTGTCCAGGCTCTGCCCACCGTGATCCGCTCGGCAGGCTGCATCCCCTCCAAC
ATTGTCTGGGACCTTCTGGCCAGCATCTGCCCAGCCAAGGCCAAGGACGTCTGCGTGGTCAGACTGTGCC
CACATGGGGCCCGGGACACCCAGAACTGCCGCCTGCTCTACTCATACCTCAATGATAGGCAGCGCCACGG
GCTGGCCTCTGTGGAGCACATGGGGATGGTCCTGCTGCCCCTGCCTGCCTTCCAGCCCCTGCCCACCAGG
CTGCGCCCTTTGGGGGGCCCAGGTCTGGAGGTCACTCACTCAAGTCTGTTGCTGGCTGTGCTGCTCCCCA
AGGAAGGGCTTCCAGACACAGCAGGGTCCAGCCCCTGGTTGGGGAAGGTTCAAAAGATGGTCTCCTTCAA
CAGTAAGGTGGAGAAGAGATACTATCAGCCAGATGACAGGAGGCCGAATGTGCCCCTGAAGGGCACCCCT
CCCCCAGGAGGTGCCTGGCAGCAGAGCCAGGGCAGGGGCAGTATAGCTCCAAGGGGAATCTCTGCTTGGC
AGAGGCCCCCCAGAGGCAGGGGGAGGCTCTGGCCAGAGCCTGAAAACTGGCAGCATCCTGGGCGAGGGCA
GTGGCCCCCAGAGCCAGGCTTGCGCCAGTCCCAGCATCCCTATTCAGTAGCACCAGCTGGTCATGGCTTT
GGCCGTGGCCAGCACTTCCACAGGGACTCCTGTCCCCACCAAGCCCTGCTCCGGCACCTCGAATCCCTGG
CGACCATGAGTCACCAGCTCCAAGCCTTACTGTGCCCCCAGACCAAGAGCTCCATCCCCCGCCCTCTGCA
GCGTTTGTCTAGCGCCCTTGCAGCTCCAGAGCCCCCTGGCCCAGCCCGTGACTCCTCTTTGGGGCCTACA
GATGAAGCTGGCTCTGAGTGTCCCTTCCCTAGAAAGGCCTGA

Translation (1203 aa):
MSQAGDVEGPSTGDPVLSPQHNCELLQNMEGASSMPGLSPDGPGASSGPGVRAGSRRKIPRKEALRGGSS
RAAGAAEVRPGVLELLAVVQSRGSMLAPGLHMQLPSVPTQGRALTSKRLQVSLCDILDDSCPRKLCSRSA
GLPERALACRERLAGVEEVSCLRPREARDGGMSSPGCDRRSPTLSKEEPPGRPLTSSPDPVPVRVRKKWR
RQGAHSECEEGAGDFLWLDQSPRGDNLLSVGDPPQVADLESLGGPCRPPSPKDTGSGPGEPGGSGAGCAS
GTEKFGYLPATGDGPQPGSPCGPVGFPVPSGGESLSSAAQAPPQSAALCLGASAQASAEQQEAVCVVRTG
SDEGQAPAQDQEELEAKAQPASRGRLEQGLAAPADTCASSREPLGGLSSSLDTEASRACSGPFMEQRRSK
GTKNLKKGPVPCAQDRGTDRSSDNSHQDRPEEPSPGGCPRLEEVKIPHGVKLVCYLGSGPVIQLLGAISH
GQAGGQLPPKLEVLEDLMEVSSPSPAQRLRRKKRPMVQGPAGCQVFQPSPSGGTAGDPGGLSDPFYPPRS
GSLALGDPSSDPACSQSGPMEAEEDSLPEQPEDSAQLQQEKPSLYIGVRGTVVRSMQEVLWTRLRELPDP
VLSEEVVEGIAAGIEAALWDLTQGTNGRYKTKYRSLLFNLRDPRNLDLFLKVVHGDVTPYDLVRMSSMQL
APQELARWRDQEEKRGLNIIEQQQKEPCRLPASKMTHKGEVEIQRDMDQTLTLEDLVGPQMFMDCSPQAL
PIASEDTTGQHDHHFLDPNCHICKDWEPSNELLGSFEAAKSCGDNIFQKALSQTPMPAPEMPKTRELSPT
EPQDRVPPSGLHVPAAPTKALPCLPPWEGVLDMFSIKRFRARAQLVSGHSCRLVQALPTVIRSAGCIPSN
IVWDLLASICPAKAKDVCVVRLCPHGARDTQNCRLLYSYLNDRQRHGLASVEHMGMVLLPLPAFQPLPTR
LRPLGGPGLEVTHSSLLLAVLLPKEGLPDTAGSSPWLGKVQKMVSFNSKVEKRYYQPDDRRPNVPLKGTP
PPGGAWQQSQGRGSIAPRGISAWQRPPRGRGRLWPEPENWQHPGRGQWPPEPGLRQSQHPYSVAPAGHGF
GRGQHFHRDSCPHQALLRHLESLATMSHQLQALLCPQTKSSIPRPLQRLSSALAAPEPPGPARDSSLGPT
DEAGSECPFPRKA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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