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Report for CCDS59684.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
59684.1 Public Mus musculus 5 Setd1b 23 108 98 CCDS HistoryNCBI Gene:208043Re-query CCDS DB by CCDS ID:59684.1Re-query CCDS DB by GeneID:208043See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 13, NCBI annotation release 103, Ensembl annotation release 72

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 59684.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000163030.8 ENSMUSP00000133933.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163030.8Link to Ensembl Protein Viewer:ENSMUSP00000133933.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163030Re-query CCDS DB by Protein ID:ENSMUSP00000133933
Original member Current member EBI ENSMUST00000056053.8 ENSMUSP00000134686.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056053.8Link to Ensembl Protein Viewer:ENSMUSP00000134686.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000056053Re-query CCDS DB by Protein ID:ENSMUSP00000134686
Original member Current member NCBI NM_001040398.2 NP_001035488.2 Accepted alive Link to Nucleotide Sequence:NM_001040398.2Link to Protein Sequence:NP_001035488.2Re-query CCDS DB by Nucleotide ID:NM_001040398Re-query CCDS DB by Protein ID:NP_001035488Link to BLAST:NP_001035488.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035488.2 1985 Q8CFT2-1 1985 100% 0 0

Chromosomal Locations for CCDS 59684.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 123142957 123143127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123143356 123143454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123144081 123144351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123146550 123146662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123147547 123148755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123151835 123152659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123156971 123157232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123157321 123157670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123157753 123157867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123158393 123158944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123159870 123161129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123161751 123161917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123163154 123163285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123163372 123163491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123163571 123163708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123165833 123166006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5958 nt):
ATGGAGAACAGTCACCCCCACCACCACCACCAGCAGCCCCCGCCGCAGCCCGGCCCTTCGGGCGAGAGGA
GGAACCACCATTGGAGAAGTTACAAGTTGATGATTGACCCGGCTCTGAAAAAGGGGCACCATAAACTGTA
CCGCTACGATGGGCAGCATTTCAGCCTGGCCATGTCCAGCAACCGCCCGGTGGAGATCGTGGAAGATCCC
CGGGTGGTCGGAATCTGGACCAAAAACAAGGAGCTGGAGCTGTCTGTGCCCAAATTCAAGATCGATGAGT
TCTACGTGGGCCCTGTGCCTCCAAAGCAGGTGACATTTGCCAAGCTGAATGACAACGTCCGTGAAAACTT
CCTAAGGGACATGTGCAAAAAGTATGGGGAGGTGGAGGAGGTGGAGATCTTGTATAACCCGAAGACCAAG
AAACACCTGGGCATTGCCAAGGTGGTCTTTGCCACAGTCAGGGGCGCCAAGGAGGCCGTCCAACACCTGC
ACAGCACTTCTGTCATGGGCAACATTATCCACGTGGAGCTGGACACCAAAGGGGAAACTCGCATGCGCTT
CTACGAGCTGTTGGTCACCGGCCGGTACACCCCTCAGACCCTCCCTGTTGGTGAGCTGGATGCTATTTCT
CCGATTGTGAGCGAGACCCTGCAGCTATCAGATGCTCTGAAGCGCCTCAAAGATGGCAGCCTGTCTGCAG
GCTGCGGCTCTGGCTCCTCGTCAGTCACCCCCAATAGCGGTGGGACCCCCTTCTCCCAAGACACAGCTTA
CTCCAGCTGCCGCCTGGACACACCCAACTCCTATGGACAAGGCACCCCAATCACGCCTCGCCTGGGCACC
CCTTTCTCCCAGGATTCCAGCTACTCCAGCCGTCAGCCCACACCCTCCTATCTCTTCAGCCAGGACCCCA
CAGCCACATTCAAGGCGAGGCGGCACGAGAGCAAGTTCACAGATGCCTACAACCGCCGCCACGAACATCA
TTATGTCCACAACTCAGCGGTGGCTGGAGCCACAGCTCCTTTCCGAGGCTCCTCGGACCTCTCTTTTGGG
ACAGTTGGCAGCAGCGGGACTCCCTTCAAGGCTCAGTCGCAGGATGCCACCACGTTTGCCCATACTCCAC
CTCCTGCCCAAACAGCCACGGCTTCTGGATTCAAATCAGCTTTCTCTCCATATCAGACTCCAGCACCCCC
CTTCCCGCCACCCCCTGAGGAGCCCACCGCCACAGCAGCCTTTGGGAGCCGCGACAGTGGGGAGTTCCGG
AGGGCACCTGCGCCCCCGCCCCTGCCACCCGCTGAGCCTCCAGCCAAGGAGAAGCCAGGCACCCCTCCTG
GTCCCCCGCCCCCTGACAGCAACAGCATGGAGCTGGGTGGTCGGCCTACCTTTGGCTGGAGTCCTGAGCC
CTGTGACAGCCCTGGCACCCCTACTCTGGAGTCCTCTCCAGCCGGGCCAGAGAAGCCCCATGACAGCCTG
GACTCCCGCATTGAGATGCTGCTGAAGGAGCAACGCACCAAGCTGCCCTTCCTTCGTGAGCAGGACTCAG
ACACCGAGATACAGATGGAAGGCAGCCCCATCTCCTCCTCCTCCTCCCAACTCTCCCCGCTCAGCCACTT
TGGCACTAACTCGCAGCCCGGCTTCCGCGGTCCCTCGCCACCCTCCTCGCGCCCCTCCAGCACAGGTCTA
GAGGACATCAGTCCCACACCACTGCCTGACTCTGATGAAGATGAGGACTTGGGCCTGGGCCTGGGGCCTC
GGCCCCCACCTGAGCCAGGCCCCCCAGACCCTATGGGTCTGCTAGGCCAGACAGCCGAGGTGGATTTGGA
CCTGGCAGGAGACAGGACCCCCACCTCAGAGCGGATGGATGAGGGCCAGCAGTCCTCAGGAGAGGACATG
GAAATCTCAGATGATGAGATGCCCTCGGCCCCCATCACCAGCGCTGACTGCCCCAAGCCCATGGTGGTGA
CCCCAGGGGCCGGGGCTGTGGCAGCCCCCAACGTGCTGGCTCCAAACCTGCCCCTGCCCCCACCCCCTGG
CTTCCCTCCATTACCCCCGCCCCCTCCTCCACCCCCACCACAACCTGGCTTCCCCATGCCCCCACCTCTG
CCTCCACCACCACCACCACCACCACCAGCCCATCCTGCAGTGACAGTGCCCCCGCCACCCTTGCCAGCGC
CCCCGGGTGTCCCGCCCCCACCCATCCTTCCGCCGCTACCTCCCTTCCCACCGGGACTGTTTCCTGTGAT
GCAGGTGGACATGAGCCATGTGCTGGGTGGCCAGTGGGGTGGCATGCCCATGTCCTTCCAGATGCAAACA
CAGATGTTAAGCCGGCTCATGACAGGCCAGGGGGCTTGTCCCTACCCACCTTTCATGGCCGCTGCGGCTG
CCGCCGCTTCTGCTGGACTGCAGTTTGTCAACTTGCCCCCCTACCGGAGCCCATTCTCCCTGAGCAACAG
TGGCCCAGGACGTGGACAGCATTGGCCGCCCCTGCCCAAGTTTGACCCCTCCGTGCCACCACCAGGCTAC
ATACCACGTCAGGAGGACCCGCACAAGGCCACGGTGGATGGGGTCTTGCTGGTAGTGCTCAAGGAACTTA
AGGCCATCATGAAGCGTGATCTCAACCGCAAGATGGTAGAGGTGGTGGCCTTCCGGGCCTTTGACGAATG
GTGGGACAAGAAGGAGCGGATGGCCAAGGCCTCACTGACCCCCGTGAAGTCCGGTGAGCACAAGGACGAG
GACAGGCCAAAGCCCAAAGACCGAATCGCCTCCTGTCTGCTGGAGTCGTGGGGCAAGGGTGAGGGCCTGG
GTTACGAGGGCCTAGGCCTGGGCATTGGACTGCGGGGCGCCATTCGCTTGCCCTCCTTCAAGGTCAAGAG
GAAGGAGCCACCGGACACAGCCTCTTCTGGTGACCAGAAGCGGCTACGGCCTTCAACCTCTGTGGATGAG
GAAGATGAAGAGTCAGAGCGGGAGCGGGACCGGGACATAGCTGATGCTCCCTGCGAACTCACCAAGCGGG
ACCCCAAAAGCGTGGGTGTGCGACGCCGGCCAGGACGGCCCCTGGAGCTGGACAGCGGCGGGGAGGAGGA
TGAGAAGGAGTCCTTGTCAGCGTCCTCCTCTTCCTCAGCATCCTCATCCTCTGGATCTTCTACCACCTCA
CCCTCATCCTCCGCCTCAGACAAGGAAGAGGAGGACCGAGAAAGCACCGAGGAGGAGGAGGAGGAAGAGG
AGGAGGAAGCAGAGGAAGAGGAGGAGGAAGGCCCCAGGAGCCGCATATCCTCACCCTCATCCTCCTCAAG
CTCCGACAAGGATGACGAAGATGACAACGAAGCCGACAGCGATGGCCAGATTGATTCAGACATCGACGAT
CAGGGTGCACCCCTGTCGGAGGCCAGCGAGAAAGACAATGGAGATTCTGAGGAGGAGGAGACAGAGAGCA
TCACCACCTCAAAGGCCCCAGCTGAGTCGTCCTCATCCTCCAGTGAAAGTTCTGGATCTTCTGAGTTTGA
ATCCAGTTCCGAGTCCGAGTCTTCATCTTCATCCTCAGAGGACGAGGAGGAGATGACCGTACCTGGGGTG
GAGGAAGAAGAGGAGGAGGAGGAAGAGGAGGAGAAAGAGACTGCAATGGCTGCAGCCACGGTAGTGGCTA
TGGCAGAAGAGAGCATGCCTCCAGCGGGTGGCCAGGACTTTGAGCAGGACAGGGCAGAAGTGCCTCTGGG
CCCACGAGGCCCCATGAGGGAGTCCTTGGGCACAGAGGAGGAAGTGGACATTGAGGCTGAGGACGAAGTC
CCTGAGATGCAGGCTCCTGAGCTGGAGGAGCCTCCATTGCCCATGGGTGCTCGGAAGCTGGAAGGGAGCC
CAGAGCCCCCAGAAGAGCCAGGCCCCAACACACAAGGGGACATGCTGCTCTCTCCAGAGCTCCCTGCCCG
GGAGACGGAGGAGGCTCAACTCCCATCACCGCCTGAACATGGTCCAGAGTCAGACCTGGACATGGAGCCC
GAGCCCCCTCCTATGCTCTCCTTGCCCTTGCAGCCGCCATTGCCGCCCCCTCGACTGCTCCGGCCACCCA
GCCCACCGCCTGAGCCTGAGACCCCAGAGCCCCCCAAACCTCCCGTCCCCCTGGAGCCTCCCCCAGAAGA
CCACCCTCCACGTACCCCAGGCCTCTGTGGCAGTCTGGCCAAGTCACAGAGCACAGAGACAGTGCCAGCC
ACCCCAGGCGGGGAGCCCCCACTGTCAGGGAGCAGCAGTGGCCTGTCCCTGAGCTCCCCGCAGGTGCCTG
GCAGCCCGTTCTCCTATCCATCCCCGTCCCCCGGCTTGAGCAGTGGGGGACTTCCACGGACACCTGGTCG
GGACTTCAGCTTCACACCTACTTTCCCTGAGCCCAGTGGACCCTTGCTTCTGCCTGTCTGTCCCCTCCCA
ACCGGTCGGCGAGATGAGCGTACCGGCCCCCTGGCCTCCCCAGTGCTCCTGGAAACTGGCCTGCCCCTCC
CACTTCCCCTGCCCCTGCCCTTACCTCTGGCATTGCCTGTCCCGGTTCTGAGGGCCCAGCCTCGGCCACC
TCCCCAGCTGCCTCCCCTACTGCCCGCTACCCTAGCTCCCTGCCCAACCCCCATCAAGAGGAAGCCAGGC
CGGCCCCGGAGATCCCCACCGTCCATGCTGTCCTTGGATGGGCCTTTGGTCCGGCCACCGCCAGGACCTG
CCCTTGGGAGGGACCTTCTCCTCCTGCCAGGCCAGCCACCGGCCCCCATTTTCCCCAGCGCACATGACCC
TCGGGCTGTGACCTTGGACTTCCGGAACACGGGGATCCCGGCCCCCCCACCGCCCCTCCCACCCCAGCCT
CCCCCACCTCCACCCCCACCACCCGTTGAATCCACCAAGCTACCCTTCAAGGAGCTGGACAACCAGTGGC
CCTCTGAAGCTATCCCCCCAGGACCTCGCCGAGATGAGGTCACTGAAGAGTACGTGGACCTGGCCAAGGT
GCGGGGACCGTGGCGGCGGCCACCCAAGAAGCGGCACGAAGACCTGGTGGCCCCATCGGCCTCACCTGAA
CCCTCACCACCCCAGCCTCTCTTCCGGCCCCGCTCAGAGTTTGAGGAGATGACCATCTTGTACGACATCT
GGAACGGTGGCATCGACGAGGAGGACATCCGCTTCCTGTGCGTCACCTACGAGCGCCTGCTGCAGCAGGA
CAATGGCATGGACTGGCTGAATGACACACTCTGGGTCTACCATCCCTCCACCAGCCTCTCCTCAGCCAAG
AAAAAGAAACGGGAGGACGGTATCCGTGAGCACGTGACAGGCTGCGCCCGAAGCGAGGGCTTCTACACCA
TCGACAAGAAGGACAAGCTGAGATACCTCAACAGCAGCCGTGCCAGCACAGACGAGCCCCCCATGGACAC
CCAGGGTATGAGTATCCCAGCCCAGCCCCATGCCTCTACTCGGGCAGGCTCAGAGCGGCGGTCTGAGCAG
AGGCGCCTCTTGTCCTCCTTCACCGGCAGCTGTGACAGCGACCTGCTCAAGTTCAACCAGCTCAAGTTTC
GAAAGAAGAAGCTCAAATTCTGTAAGAGCCACATTCACGACTGGGGCCTGTTTGCCATGGAGCCAATTGC
TGCTGACGAGATGGTCATCGAGTACGTGGGCCAGAACATCCGCCAGGTGATTGCGGACATGAGGGAGAAA
CGGTATGAGGATGAAGGCATCGGTAGCAGCTACATGTTCAGAGTAGACCATGACACCATCATCGACGCCA
CCAAGTGCGGCAACTTTGCACGCTTCATTAACCACAGCTGCAATCCCAACTGCTACGCCAAGGTGATCAC
GGTGGAGTCCCAGAAGAAGATCGTCATCTACTCTAAGCAGCACATCAACGTCAACGAGGAGATCACGTAC
GACTACAAGTTCCCGATCGAAGATGTCAAGATCCCCTGCCTCTGTGGCTCCGAGAACTGCCGGGGGACCC
TCAATTAG

Translation (1985 aa):
MENSHPHHHHQQPPPQPGPSGERRNHHWRSYKLMIDPALKKGHHKLYRYDGQHFSLAMSSNRPVEIVEDP
RVVGIWTKNKELELSVPKFKIDEFYVGPVPPKQVTFAKLNDNVRENFLRDMCKKYGEVEEVEILYNPKTK
KHLGIAKVVFATVRGAKEAVQHLHSTSVMGNIIHVELDTKGETRMRFYELLVTGRYTPQTLPVGELDAIS
PIVSETLQLSDALKRLKDGSLSAGCGSGSSSVTPNSGGTPFSQDTAYSSCRLDTPNSYGQGTPITPRLGT
PFSQDSSYSSRQPTPSYLFSQDPTATFKARRHESKFTDAYNRRHEHHYVHNSAVAGATAPFRGSSDLSFG
TVGSSGTPFKAQSQDATTFAHTPPPAQTATASGFKSAFSPYQTPAPPFPPPPEEPTATAAFGSRDSGEFR
RAPAPPPLPPAEPPAKEKPGTPPGPPPPDSNSMELGGRPTFGWSPEPCDSPGTPTLESSPAGPEKPHDSL
DSRIEMLLKEQRTKLPFLREQDSDTEIQMEGSPISSSSSQLSPLSHFGTNSQPGFRGPSPPSSRPSSTGL
EDISPTPLPDSDEDEDLGLGLGPRPPPEPGPPDPMGLLGQTAEVDLDLAGDRTPTSERMDEGQQSSGEDM
EISDDEMPSAPITSADCPKPMVVTPGAGAVAAPNVLAPNLPLPPPPGFPPLPPPPPPPPPQPGFPMPPPL
PPPPPPPPPAHPAVTVPPPPLPAPPGVPPPPILPPLPPFPPGLFPVMQVDMSHVLGGQWGGMPMSFQMQT
QMLSRLMTGQGACPYPPFMAAAAAAASAGLQFVNLPPYRSPFSLSNSGPGRGQHWPPLPKFDPSVPPPGY
IPRQEDPHKATVDGVLLVVLKELKAIMKRDLNRKMVEVVAFRAFDEWWDKKERMAKASLTPVKSGEHKDE
DRPKPKDRIASCLLESWGKGEGLGYEGLGLGIGLRGAIRLPSFKVKRKEPPDTASSGDQKRLRPSTSVDE
EDEESERERDRDIADAPCELTKRDPKSVGVRRRPGRPLELDSGGEEDEKESLSASSSSSASSSSGSSTTS
PSSSASDKEEEDRESTEEEEEEEEEEAEEEEEEGPRSRISSPSSSSSSDKDDEDDNEADSDGQIDSDIDD
QGAPLSEASEKDNGDSEEEETESITTSKAPAESSSSSSESSGSSEFESSSESESSSSSSEDEEEMTVPGV
EEEEEEEEEEEKETAMAAATVVAMAEESMPPAGGQDFEQDRAEVPLGPRGPMRESLGTEEEVDIEAEDEV
PEMQAPELEEPPLPMGARKLEGSPEPPEEPGPNTQGDMLLSPELPARETEEAQLPSPPEHGPESDLDMEP
EPPPMLSLPLQPPLPPPRLLRPPSPPPEPETPEPPKPPVPLEPPPEDHPPRTPGLCGSLAKSQSTETVPA
TPGGEPPLSGSSSGLSLSSPQVPGSPFSYPSPSPGLSSGGLPRTPGRDFSFTPTFPEPSGPLLLPVCPLP
TGRRDERTGPLASPVLLETGLPLPLPLPLPLPLALPVPVLRAQPRPPPQLPPLLPATLAPCPTPIKRKPG
RPRRSPPSMLSLDGPLVRPPPGPALGRDLLLLPGQPPAPIFPSAHDPRAVTLDFRNTGIPAPPPPLPPQP
PPPPPPPPVESTKLPFKELDNQWPSEAIPPGPRRDEVTEEYVDLAKVRGPWRRPPKKRHEDLVAPSASPE
PSPPQPLFRPRSEFEEMTILYDIWNGGIDEEDIRFLCVTYERLLQQDNGMDWLNDTLWVYHPSTSLSSAK
KKKREDGIREHVTGCARSEGFYTIDKKDKLRYLNSSRASTDEPPMDTQGMSIPAQPHASTRAGSERRSEQ
RRLLSSFTGSCDSDLLKFNQLKFRKKKLKFCKSHIHDWGLFAMEPIAADEMVIEYVGQNIRQVIADMREK
RYEDEGIGSSYMFRVDHDTIIDATKCGNFARFINHSCNPNCYAKVITVESQKKIVIYSKQHINVNEEITY
DYKFPIEDVKIPCLCGSENCRGTLN


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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