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Report for CCDS59654.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
59654.1 Public Mus musculus 3 Ntng1 23 108 98 CCDS HistoryNCBI Gene:80883Re-query CCDS DB by CCDS ID:59654.1Re-query CCDS DB by GeneID:80883See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 13, NCBI annotation release 103, Ensembl annotation release 72

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 59654.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000138953.8 ENSMUSP00000116213.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000138953.8Link to Ensembl Protein Viewer:ENSMUSP00000116213.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000138953Re-query CCDS DB by Protein ID:ENSMUSP00000116213
Original member Current member NCBI NM_001163350.1 NP_001156822.1 Accepted alive Link to Nucleotide Sequence:NM_001163350.1Link to Protein Sequence:NP_001156822.1Re-query CCDS DB by Nucleotide ID:NM_001163350Re-query CCDS DB by Protein ID:NP_001156822Link to BLAST:NP_001156822.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156822.1 480 Q8R4G0-4 480 100% 0 0

Chromosomal Locations for CCDS 59654.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 109782682 109782911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 109839120 109839179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 109841510 109841575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 109851765 109851791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 109872200 109872372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 109934569 109935209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 110135263 110135508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1443 nt):
ATGTATTTGTCAAGATTCCTGTCGATCCATGCCCTGTGGGTGACAGTGTCCTCTGTGATGCAGCCCTACC
TTTTCGTGTGGGGACATTATGATGTATGTAAGAGCCTGATTTACACAGAAGAAGGCAAAGTTTGGGATTA
CACAGCCTGCCAGCCGGAATCCACGGACATGACCAAGTATCTGAAAGTGAAACTGGACCCTCCGGATATT
ACCTGTGGAGACCCTCCAGAGTCCTTCTGTGCAATGGGCAACCCTTACATGTGCAATAATGAGTGTGATG
CGAGTACCCCTGAACTGGCACACCCTCCTGAGCTGATGTTTGATTTTGAAGGAAGACATCCCTCCACATT
TTGGCAGTCTGCTACTTGGAAGGAGTACCCCAAACCTCTCCAGGTTAACATCACTCTGTCTTGGAGCAAA
ACCATTGAACTCACAGACAACATAGTTATTACCTTTGAATCGGGGCGTCCAGACCAAATGATCCTAGAGA
AATCTCTCGACTACGGACGAACATGGCAGCCCTATCAGTATTATGCCACAGACTGCCTCCATGCATTCCA
CATGGACCCGAAATCCGTGAAGGATTTATCTCAGCACACGGTCTTGGAAATCATTTGCACGGAAGAGTAC
TCCACTGGGTACTCCACGAATAGCAAAATAATCCACTTCGAGATCAAAGACAGGTTTGCGTTTTTCGCTG
GACCTCGGCTACGAAATATGGCTTCCCTCTATGGACAGCTGGATACAACCAAGAAACTCAGAGATTTCTT
CACTGTCACAGACCTGAGGATCAGGCTGTTGAGACCCGCCGTTGGGGAAATATTTGTAGATGAACTACAT
TTGGCACGTTACTTTTATGCGATCTCAGACATAAAGGTGCGAGGAAGGTGCAAGTGCAACCTGCATGCCA
CTTCGTGTTTGTATGACAACAGCAAACTGACATGTGAATGTGAGCACAACACTACAGGTCCCGACTGTGG
GAAATGCAAGAAGAACTACCAGGGCCGACCTTGGAGCCCCGGCTCATACCTCCCCATCCCCAAAGGCACC
GCAAACACCTGTATCCCCAGCATTTCCAGTATCGGTACTCCTCCAAAGTTTAATAGGATATGGCCGAATA
TTTCTTCCCTTGAGGTTTCTAACCCAAAACAAGTTGCTCCCAAATTAGCTTTGTCAACAGTTTCTTCTGT
TCAAGTTGCAAACCACAAGCGAGCTAATGTCTGCGACAATGAGCTCCTGCACTGCCAGAATGGAGGGACC
TGCCAGAACAATGTGCGCTGCGCGTGCCCAGACGCCTACACCGGCATCCTCTGTGAGAAGCTACGGTGCG
AAGAGGCGGGCAGCTGTGGCTCCGAATCCGGCCAGGGAGCACCCCCGCGGGGCTCCCCAGCACTGCTGCT
GCTGACCATGCTGCTGGGGACTGCCGGTCCCCTGGTGTTCTAG

Translation (480 aa):
MYLSRFLSIHALWVTVSSVMQPYLFVWGHYDVCKSLIYTEEGKVWDYTACQPESTDMTKYLKVKLDPPDI
TCGDPPESFCAMGNPYMCNNECDASTPELAHPPELMFDFEGRHPSTFWQSATWKEYPKPLQVNITLSWSK
TIELTDNIVITFESGRPDQMILEKSLDYGRTWQPYQYYATDCLHAFHMDPKSVKDLSQHTVLEIICTEEY
STGYSTNSKIIHFEIKDRFAFFAGPRLRNMASLYGQLDTTKKLRDFFTVTDLRIRLLRPAVGEIFVDELH
LARYFYAISDIKVRGRCKCNLHATSCLYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGT
ANTCIPSISSIGTPPKFNRIWPNISSLEVSNPKQVAPKLALSTVSSVQVANHKRANVCDNELLHCQNGGT
CQNNVRCACPDAYTGILCEKLRCEEAGSCGSESGQGAPPRGSPALLLLTMLLGTAGPLVF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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