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Report for CCDS58871.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58871.1 Public Homo sapiens 3 HTR3E 24 110 108 CCDS HistoryNCBI Gene:285242Re-query CCDS DB by CCDS ID:58871.1Re-query CCDS DB by GeneID:285242See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58871.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000440596.2 ENSP00000406050.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000440596.2Link to Ensembl Protein Viewer:ENSP00000406050.2Re-query CCDS DB by Nucleotide ID:ENST00000440596Re-query CCDS DB by Protein ID:ENSP00000406050
Original member Current member NCBI NM_001256614.1 NP_001243543.1 Accepted alive Link to Nucleotide Sequence:NM_001256614.1Link to Protein Sequence:NP_001243543.1Re-query CCDS DB by Nucleotide ID:NM_001256614Re-query CCDS DB by Protein ID:NP_001243543Link to BLAST:NP_001243543.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001243543.1 482 A5X5Y0-6 482 100% 0 0

Chromosomal Locations for CCDS 58871.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 184100373 184100651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184104182 184104369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184104787 184104956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184105267 184105427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184105765 184105969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184106128 184106343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184106464 184106693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1449 nt):
ATGTTAGCTTTCATTTTATCACGGGCGACCCCACGCCCTGCCTTGGGGCCCCTCTCATATAGGGAGCACA
GGGTTGCTCTCCTTCATCTCACACATTCGATGTCCACTACAGGAAGGGGCGTTACTTTCACCATCAATTG
CTCAGGGTTTGGCCAGCACGGGGCGGATCCCACTGCTCTGAATTCAGTGTTTAATAGAAAGCCCTTCCGT
CCGGTCACCAACATCAGCGTCCCCACCCAAGTCAACATCTCCTTCGCGATGTCTGCCATCCTAGATGTGG
TTTGGGATAACCCATTTATCAGCTGGAACCCAGAGGAATGTGAGGGCATCACGAAGATGAGTATGGCAGC
CAAGAACCTGTGGCTCCCAGACATTTTCATCATTGAACTGTGCGTATCAAGGGCTGGTCAGAGGGAAGTC
CCATCTCCTGGTAGCCACAGAGATCACAGTTTACCATTGGGGCCACTCATGGATGTGGATAAGACCCCAA
AAGGCCTCACAGCATATGTAAGTAATGAAGGTCGCATCAGGTATAAGAAACCCATGAAGGTGGACAGTAT
CTGTAACCTGGACATCTTCTACTTCCCCTTCGACCAGCAGAACTGCACACTCACCTTCAGCTCATTCCTC
TACACAGTGGACAGCATGTTGCTGGACATGGAGAAAGAAGTGTGGGAAATAACAGACGCATCCCGGAACA
TCCTTCAGACCCATGGAGAATGGGAGCTCCTGGGCCTCAGCAAGGCCACCGCAAAGTTGTCCAGGGGAGG
CAACCTGTATGATCAGATCGTGTTCTATGTGGCCATCAGGCGCAGGCCCAGTCTCTATGTCATAAACCTT
CTCGTGCCCAGTGGCTTTCTGGTTGCCATCGATGCCCTCAGCTTCTACCTGCCAGTGAAAAGTGGGAATC
GTGTCCCATTCAAGATAACGCTCCTGCTGGGCTACAACGTCTTCCTGCTCATGATGAGTGACTTGCTCCC
CACCAGTGGCACCCCCCTCATCGGTGTCTACTTCGCCCTGTGCCTGTCCCTGATGGTGGGCAGCCTGCTG
GAGACCATCTTCATCACCCACCTGCTGCACGTGGCCACCACCCAGCCCCCACCCCTGCCTCGGTGGCTCC
ACTCCCTGCTGCTCCACTGCAACAGCCCGGGGAGATGCTGTCCCACTGCGCCCCAGAAGGAAAATAAGGG
CCCGGGTCTCACCCCCACCCACCTGCCCGGTGTGAAGGAGCCAGAGGTATCAGCAGGGCAGATGCCGGGC
CCTGCGGAGGCAGAGCTGACAGGGGGCTCAGAATGGACAAGGGCCCAGCGGGAACACGAGGCCCAGAAGC
AGCACTCAGTGGAGCTGTGGTTGCAGTTCAGCCACGCGATGGACGCCATGCTCTTCCGCCTCTACCTGCT
CTTCATGGCCTCCTCTATCATCACCGTCATATGCCTCTGGAACACCTAG

Translation (482 aa):
MLAFILSRATPRPALGPLSYREHRVALLHLTHSMSTTGRGVTFTINCSGFGQHGADPTALNSVFNRKPFR
PVTNISVPTQVNISFAMSAILDVVWDNPFISWNPEECEGITKMSMAAKNLWLPDIFIIELCVSRAGQREV
PSPGSHRDHSLPLGPLMDVDKTPKGLTAYVSNEGRIRYKKPMKVDSICNLDIFYFPFDQQNCTLTFSSFL
YTVDSMLLDMEKEVWEITDASRNILQTHGEWELLGLSKATAKLSRGGNLYDQIVFYVAIRRRPSLYVINL
LVPSGFLVAIDALSFYLPVKSGNRVPFKITLLLGYNVFLLMMSDLLPTSGTPLIGVYFALCLSLMVGSLL
ETIFITHLLHVATTQPPPLPRWLHSLLLHCNSPGRCCPTAPQKENKGPGLTPTHLPGVKEPEVSAGQMPG
PAEAELTGGSEWTRAQREHEAQKQHSVELWLQFSHAMDAMLFRLYLLFMASSIITVICLWNT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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