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Report for CCDS58866.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58866.1 Public Homo sapiens 3 PEX5L 24 110 108 CCDS HistoryNCBI Gene:51555Re-query CCDS DB by CCDS ID:58866.1Re-query CCDS DB by GeneID:51555See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58866.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000263962.12 ENSP00000263962.8 Accepted alive Link to Ensembl Transcript Viewer:ENST00000263962.12Link to Ensembl Protein Viewer:ENSP00000263962.8Re-query CCDS DB by Nucleotide ID:ENST00000263962Re-query CCDS DB by Protein ID:ENSP00000263962
Original member Current member NCBI NM_001256750.2 NP_001243679.1 Accepted alive Link to Nucleotide Sequence:NM_001256750.2Link to Protein Sequence:NP_001243679.1Re-query CCDS DB by Nucleotide ID:NM_001256750Re-query CCDS DB by Protein ID:NP_001243679Link to BLAST:NP_001243679.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001243679.1 624 Q8IYB4-2 624 100% 0 0

Chromosomal Locations for CCDS 58866.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 179801828 179802032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179807674 179807831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179808272 179808437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179809471 179809668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179811801 179811871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179815861 179816004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179819860 179819976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179859062 179859157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179874327 179874423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179875354 179875477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179879929 179880123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179887673 179887784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179898142 179898246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179900670 179900735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 180036579 180036599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1875 nt):
ATGTACCAGGGACACATGCAGGTAGTAGGTGTAACCTTGAAGAAAAAGTGGCACTGTCTTCAAAAAAGTG
ACCTGACCCTGGCTTTGGGAAAAGGCTCTAGGGCGGCAGATAAGGCTGTTGCCATGGTGATGAAGGAGAT
ACCGAGGGAGGAGTCTGCTGAAGAAAAGCCCCTCCTTACTATGACATCACAGCTGGTGAATGAGCAACAA
GAAAGCAGACCCCTCCTGAGTCCCTCCATCGATGACTTTCTCTGTGAAACCAAATCGGAAGCAATAGCAA
GGCCAGTAACATCCAATACAGCTGTATTGACCACTGGCTTAGATCTCCTCGACCTGAGTGAACCAGTCTC
TCAAACCCAAACCAAAGCCAAGAAGTCAGAGCCCTCATCAAAAACCTCATCCCTCAAGAAAAAGGCCGAT
GGATCTGACCTCATCAGCACGGATGCTGAGCAGAGAGGCCAGCCTCTCAGAGTCCCGGAGACTTCATCCT
TAGATCTAGACATTCAAACACAACTGGAAAAATGGGACGATGTTAAGTTTCATGGAGATCGAAATACCAA
GGGACATCCAATGGCAGAGAGAAAATCATCCTCATCTAGAACTGGATCAAAAGAGCTCTTATGGTCCTCA
GAACACAGATCTCAACCAGAACTGAGTGGTGGAAAAAGCGCCCTCAACTCTGAGTCGGCTTCAGAATTGG
AATTAGTGGCTCCGACTCAGGCTCGACTGACCAAAGAACATCGCTGGGGAAGCGCATTACTTTCTAGAAA
CCACTCCTTAGAAGAAGAGTTTGAAAGGGCAAAAGCAGCAGTGGAGTCAGATACAGAGTTTTGGGATAAG
ATGCAAGCAGAATGGGAAGAAATGGCTCGGAGGAACTGGATATCTGAGAACCAAGAAGCCCAGAACCAAG
TAACCATCTCGGCTAGTGAGAAGGGATATTACTTTCACACTGAAAACCCCTTCAAGGACTGGCCTGGAGC
ATTTGAAGAAGGCTTAAAAAGGCTGAAGGAAGGGGATCTGCCAGTCACCATCCTGTTCATGGAAGCAGCA
ATTCTTCAGGACCCTGGAGATGCAGAGGCATGGCAGTTCCTCGGGATAACCCAGGCGGAGAATGAAAATG
AACAAGCAGCTATTGTCGCCCTCCAGAGGTGCTTAGAATTACAGCCCAACAACTTAAAAGCTTTGATGGC
CTTGGCTGTGAGTTATACTAACACTGGCCATCAGCAGGATGCCTGTGACGCTCTGAAGAATTGGATTAAG
CAAAATCCAAAGTACAAATACCTTGTGAAAAGCAAGAAGGGATCTCCAGGCCTCACCCGGCGGATGTCTA
AGTCCCCAGTTGATAGCTCTGTTCTGGAAGGGGTGAAGGAATTATATCTGGAAGCTGCCCACCAAAATGG
AGATATGATCGACCCAGACCTGCAGACAGGTCTAGGGGTTCTGTTCCACCTGAGTGGAGAATTTAATAGA
GCAATAGATGCATTTAACGCTGCCTTAACTGTTCGGCCAGAGGACTATTCACTATGGAACCGCCTCGGGG
CGACCTTGGCGAACGGAGACCGCAGCGAGGAAGCCGTGGAGGCCTATACGCGAGCACTGGAGATTCAGCC
AGGATTCATCCGGTCCAGATACAACCTAGGAATAAGCTGCATCAACCTGGGCGCCTACAGAGAAGCGGTC
AGCAATTTTCTCACTGCCCTCAGTTTGCAAAGAAAGAGCAGGAATCAGCAGCAAGTTCCTCATCCTGCAA
TCTCTGGGAATATCTGGGCTGCCCTCAGAATTGCGCTCTCTCTGATGGACCAACCAGAACTCTTCCAGGC
GGCTAATCTTGGTGACCTGGATGTCCTCTTAAGAGCTTTCAACTTGGATCCTTGA

Translation (624 aa):
MYQGHMQVVGVTLKKKWHCLQKSDLTLALGKGSRAADKAVAMVMKEIPREESAEEKPLLTMTSQLVNEQQ
ESRPLLSPSIDDFLCETKSEAIARPVTSNTAVLTTGLDLLDLSEPVSQTQTKAKKSEPSSKTSSLKKKAD
GSDLISTDAEQRGQPLRVPETSSLDLDIQTQLEKWDDVKFHGDRNTKGHPMAERKSSSSRTGSKELLWSS
EHRSQPELSGGKSALNSESASELELVAPTQARLTKEHRWGSALLSRNHSLEEEFERAKAAVESDTEFWDK
MQAEWEEMARRNWISENQEAQNQVTISASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAA
ILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTGHQQDACDALKNWIK
QNPKYKYLVKSKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNR
AIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAV
SNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDVLLRAFNLDP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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