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Report for CCDS5857.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5857.1 Public Homo sapiens 7 PARP12 24 110 108 CCDS HistoryNCBI Gene:64761Re-query CCDS DB by CCDS ID:5857.1Re-query CCDS DB by GeneID:64761See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5857.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000263549.8 ENSP00000263549.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000263549.8Link to Ensembl Protein Viewer:ENSP00000263549.3Re-query CCDS DB by Nucleotide ID:ENST00000263549Re-query CCDS DB by Protein ID:ENSP00000263549
Original member Current member NCBI NM_022750.4 NP_073587.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022750.4Link to Protein Sequence:NP_073587.1Re-query CCDS DB by Nucleotide ID:NM_022750Re-query CCDS DB by Protein ID:NP_073587Link to BLAST:NP_073587.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_073587.1 701 Q9H0J9 701 100% 0 0

Chromosomal Locations for CCDS 5857.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 140024560 140024885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140026197 140026348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140027276 140027406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140028613 140028688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140034235 140034331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140037715 140037856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140041644 140041839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140046884 140047007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140054662 140054763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140056856 140057153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140057899 140058034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140062522 140062847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2106 nt):
ATGGCCCAGGCCGGCGTCGTCGGTGAGGTCACCCAGGTGCTGTGCGCGGCCGGGGGCGCCCTGGAGTTGC
CCGAGCTGCGGCGCCGCTTGCGGATGGGCTTGAGCGCCGACGCGCTGGAGCGGCTGCTGCGGCAGCGTGG
GCGCTTCGTGGTGGCGGTGCGGGCGGGCGGCGCAGCCGCGGCCCCGGAGCGCGTGGTGCTGGCCGCCTCG
CCGCTGCGCCTGTGTCGCGCGCACCAGGGCTCCAAGCCGGGCTGCGTGGGGCTCTGCGCGCAGCTCCACC
TCTGCAGGTTCATGGTCTACGGCGCCTGCAAGTTCCTGAGAGCCGGGAAGAACTGTAGGAATAGTCACAG
CTTGACAACCGAACACAACCTGAGTGTGCTGAGAACTCATGGCGTTGACCACCTGAGCTATAATGAGCTA
TGCCAACTCTTGTTTCAGAACGACCCCTGGCTTTTGCCAGAAATTTGCCAACATTACAACAAAGGAGATG
GACCCCACGGCTCTTGTGCCTTTCAAAAGCAGTGCATCAAGCTCCATATCTGCCAGTATTTTTTACAGGG
GGAATGCAAGTTTGGCACTAGCTGTAAGAGATCCCATGATTTCTCTAATTCTGAGAATCTGGAAAAATTG
GAGAAGTTGGGTATGAGCTCAGACCTGGTGAGCAGGCTGCCTACCATTTATAGAAATGCACATGACATCA
AGAATAAGAGCTCTGCCCCCAGCAGAGTGCCTCCTCTTTTTGTCCCACAGGGGACTTCTGAAAGAAAAGA
CAGTTCAGGTTCTGTGTCCCCAAACACTCTTAGCCAGGAGGAGGGTGATCAGATCTGTTTGTACCATATC
CGGAAAAGTTGTAGCTTTCAAGATAAGTGCCATAGAGTTCATTTCCATTTGCCGTATCGATGGCAATTCT
TGGATAGAGGCAAATGGGAGGATTTGGACAACATGGAACTTATTGAAGAGGCATATTGCAATCCCAAAAT
AGAAAGGATCCTGTGCTCTGAGTCAGCCAGTACCTTTCACTCTCATTGTCTGAACTTTAACGCCATGACT
TACGGTGCTACCCAGGCTCGCCGCCTCTCCACGGCCTCCTCTGTCACCAAACCTCCACACTTCATCCTCA
CCACTGACTGGATTTGGTACTGGAGTGATGAGTTTGGTTCTTGGCAGGAATATGGAAGACAGGGCACGGT
GCACCCTGTGACCACTGTCAGCAGTAGCGACGTGGAGAAGGCCTACCTGGCCTACTGTACACCGGGGTCT
GACGGCCAGGCAGCCACCTTGAAGTTCCAGGCCGGAAAGCACAACTACGAGTTAGATTTCAAAGCCTTCG
TTCAGAAAAACCTGGTCTATGGCACAACTAAAAAGGTTTGCCGCAGACCCAAATACGTGTCTCCCCAGGA
TGTGACGACCATGCAAACCTGCAATACCAAGTTTCCAGGCCCGAAGAGCATCCCAGACTATTGGGACTCC
TCTGCCCTGCCAGACCCAGGCTTTCAGAAGATCACCCTTAGTTCTTCCTCGGAAGAGTATCAGAAGGTCT
GGAACCTCTTTAACCGCACGCTGCCTTTCTACTTTGTTCAGAAGATTGAGCGAGTACAGAACCTGGCCCT
CTGGGAAGTCTACCAGTGGCAAAAAGGACAGATGCAGAAGCAGAACGGAGGGAAGGCCGTGGACGAGCGG
CAGCTGTTCCACGGCACCAGCGCCATTTTTGTGGACGCCATCTGCCAGCAGAACTTTGACTGGCGGGTCT
GTGGTGTTCATGGCACTTCCTACGGCAAGGGGAGCTACTTTGCCCGAGATGCTGCATATTCCCACCACTA
CAGCAAATCCGACACGCAGACCCACACGATGTTCCTGGCCCGGGTGCTGGTGGGCGAGTTCGTCAGGGGC
AATGCCTCCTTTGTCCGTCCGCCGGCCAAGGAGGGCTGGAGCAACGCCTTCTATGATAGCTGCGTGAACA
GTGTGTCCGACCCCTCCATCTTTGTGATCTTTGAGAAACACCAGGTCTACCCAGAGTATGTCATCCAGTA
CACCACCTCCTCCAAGCCCTCGGTCACACCCTCCATCCTGCTGGCCTTGGGCTCCCTGTTCAGCAGCCGA
CAGTGA

Translation (701 aa):
MAQAGVVGEVTQVLCAAGGALELPELRRRLRMGLSADALERLLRQRGRFVVAVRAGGAAAAPERVVLAAS
PLRLCRAHQGSKPGCVGLCAQLHLCRFMVYGACKFLRAGKNCRNSHSLTTEHNLSVLRTHGVDHLSYNEL
CQLLFQNDPWLLPEICQHYNKGDGPHGSCAFQKQCIKLHICQYFLQGECKFGTSCKRSHDFSNSENLEKL
EKLGMSSDLVSRLPTIYRNAHDIKNKSSAPSRVPPLFVPQGTSERKDSSGSVSPNTLSQEEGDQICLYHI
RKSCSFQDKCHRVHFHLPYRWQFLDRGKWEDLDNMELIEEAYCNPKIERILCSESASTFHSHCLNFNAMT
YGATQARRLSTASSVTKPPHFILTTDWIWYWSDEFGSWQEYGRQGTVHPVTTVSSSDVEKAYLAYCTPGS
DGQAATLKFQAGKHNYELDFKAFVQKNLVYGTTKKVCRRPKYVSPQDVTTMQTCNTKFPGPKSIPDYWDS
SALPDPGFQKITLSSSSEEYQKVWNLFNRTLPFYFVQKIERVQNLALWEVYQWQKGQMQKQNGGKAVDER
QLFHGTSAIFVDAICQQNFDWRVCGVHGTSYGKGSYFARDAAYSHHYSKSDTQTHTMFLARVLVGEFVRG
NASFVRPPAKEGWSNAFYDSCVNSVSDPSIFVIFEKHQVYPEYVIQYTTSSKPSVTPSILLALGSLFSSR
Q


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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