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Report for CCDS57999.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57999.1 Public Homo sapiens 1 TEX38 24 110 108 CCDS HistoryNCBI Gene:374973Re-query CCDS DB by CCDS ID:57999.1Re-query CCDS DB by GeneID:374973See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57999.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000334122.5 ENSP00000455854.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000334122.5Link to Ensembl Protein Viewer:ENSP00000455854.1Re-query CCDS DB by Nucleotide ID:ENST00000334122Re-query CCDS DB by Protein ID:ENSP00000455854
Original member Current member NCBI NM_001145474.4 NP_001138946.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001145474.4Link to Protein Sequence:NP_001138946.1Re-query CCDS DB by Nucleotide ID:NM_001145474Re-query CCDS DB by Protein ID:NP_001138946Link to BLAST:NP_001138946.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138946.1 206 Q6PEX7 206 100% 0 0

Chromosomal Locations for CCDS 57999.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 46671935 46671971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 46672873 46673456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (621 nt):
ATGGATTCCCAACAGGAGGACCTGCGCTTCCCTGGGATGTGGGTCTCATTGTACTTTGGAATCCTGGGGC
TG
TGTTCTGTGATAACTGGAGGGTGCATTATCTTTCTGCACTGGAGGAAGAACTTGAGGCGGGAAGAGCA
T
GCCCAGCAGTGGGTGGAGGTGATGAGAGCTGCCACATTCACCTACAGCCCATTGTTGTACTGGATTAAC
AAG
CGACGGCGCTACGGCATGAATGCAGCCATCAACACGGGCCCTGCCCCTGCTGTCACCAAGACTGAGA
CT
GAGGTCCAGAATCCAGATGTTCTGTGGGATTTGGACATCCCCGAAGGCAGGAGCCATGCTGACCAAGA
C
AGCAACCCCAAGGCGGAAGCCCCTGCTCCCCTGCAACCTGCACTGCAGCTGGCTCCACAGCAGCCCCAG
GCC
AGATCCCCATTCCCACTTCCCATCTTTCAGGAGGTGCCCTTTGCCCCACCCTTGTGCAACCTACCCC
CC
CTGCTGAACCACTCTGTCTCCTATCCTTTGGCCACCTGTCCTGAAAGGAATGTTCTCTTCCATTCCCT
C
CTGAATCTGGCCCAGGAAGACCATAGCTTCAATGCCAAGCCTTTTCCTTCAGAACTGTAG


Translation (206 aa):
MDSQQEDLRFPGMWVSLYFGILGLCSVITGGCIIFLHWRKNLRREEHAQQWVEVMRAATFTYSPLLYWIN
K
RRRYGMNAAINTGPAPAVTKTETEVQNPDVLWDLDIPEGRSHADQDSNPKAEAPAPLQPALQLAPQQPQ
A
RSPFPLPIFQEVPFAPPLCNLPPLLNHSVSYPLATCPERNVLFHSLLNLAQEDHSFNAKPFPSEL




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser