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Report for CCDS57618.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57618.1 Public Mus musculus 8 Sorbs2 23 108 98 CCDS HistoryNCBI Gene:234214Re-query CCDS DB by CCDS ID:57618.1Re-query CCDS DB by GeneID:234214See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57618.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000171337.9 ENSMUSP00000128000.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171337.9Link to Ensembl Protein Viewer:ENSMUSP00000128000.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000171337Re-query CCDS DB by Protein ID:ENSMUSP00000128000
Original member Current member NCBI NM_001205219.1 NP_001192148.1 Accepted alive Link to Nucleotide Sequence:NM_001205219.1Link to Protein Sequence:NP_001192148.1Re-query CCDS DB by Nucleotide ID:NM_001205219Re-query CCDS DB by Protein ID:NP_001192148Link to BLAST:NP_001192148.1

Chromosomal Locations for CCDS 57618.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 45736193 45736202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45741487 45741579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45745420 45745446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45745717 45745841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45759053 45759191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45763019 45763191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45769829 45769895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45770546 45770590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45772534 45772708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45775589 45775703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45785269 45785325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45789976 45790025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45792781 45792968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45794978 45796558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45799710 45799798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45800965 45801011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45803632 45803746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45803833 45803961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45805653 45805853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45819719 45819768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45823729 45823835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45825745 45825806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3645 nt):
ATGAATACAGATAGCGGTGGGTGTGCTCGCAAACGTGCCGCCATGTCTGTTACGTTAACATCTGTGAAGA
GAGTTCAAAGTTCTCCAAACCTATTGGCTGCAGGGCGTGAGTCTCAGTCTCCAGATTCAGCTTGGAGATC
TTACAATGATCGGAATCCAGAGACACTGAACGGAGATGCCACATATTCCTCTCTTGCAGCAAAAGGTTTT
AGAAGCGTTCGGCCAAACCTGCAAGACAAAAGATCACCGACCCAGAGCCAGATCACTATCAATGGCAACT
CTGGTGGCGCCGTGAGTCCAGTGAGTTACTATCAGAGGCCATTCTCCCCTTCTGCATACTCCCTCCCAGC
CTCGCTGAACTCCAGCATTATCATGCAGCACGGCAGGTCTCTTGATTCTGCAGAGACATATTCCCAGCAT
GCCCAGTCCCTGGATGGCACCATGGGAAGCTCCATCCCGCTCTATAGATCCTCCGAGGAAGAGAAGAGGG
TCACGGTCATCAAAGCCCCGCATTACCCAGGGATCGGCCCTGTGGATGAGTCTGGAATCCCCACAGCCAT
TAGGACGACTGTCGACAGGCCAAAGGACTGGTACAAGACAATGTTCAAGCAAATCCACATGGTACACAAG
CCGGATGAGGACACAGACATGTATAATACTCCTTACACATACAACGCAGGTCTGTACAACTCGCCCTACA
GTGCTCAGTCCCACCCGGCTGCGAAGACTCAGACCTACAGACCTCTTTCGAAAAGCCACTCAGACAATGG
CACCGATGCGTTTAAGGAGGTGCCCTCCCCAGTGCCTCCCCCACACGTCCCACCACGACCAAGAGATCAG
TCTTCAACACTAAAGCATGACTGGGACCCTCCAGACAGAAAGGTGGACACCAGGAAATTTCGATCGGAGC
CAAGGAGTATTTTTGAATATGAGCCTGGGAAGTCGTCCATTCTGCAGCACGAAAGACCCCCTCCTAAAAA
GGCTCTGGATTATGTTCAAGATCATTCTTCCGGTGTGTCCAACGAGGTCTCCATCTATCAGTCCTCCATA
GACAGAAGCCTGGAAAGACCCAGCAGCTCTGCAAGCATGGCCGGTGACTTTAGGAAACGGAGGAAGAGCG
AACCTGCAGTGGGCCCACTCCGGGGCTTGGGGGATCAGAGTTCAAGCAGGACCAGCCCTGGCCGGGCGGA
CCTCCCAGGATCAAGTTCCACCTTTACGAAGTCTTTCATTAGCTCTTCTCCTTCCTCTCCCTCGAGAGCA
CAAGGTGGGGATGATAGCAAAATGTGTCCGCCCCTTTGCAGTTACTCGGGGCTCAATGGCACCCCCTCTG
GTGAGTTAGAGTGCTGCAACGCTTACAGACAACATTTGGACGTCCCCGGGGACTCGCAAAGGGCCATCAC
TTTCAAGAATGGCTGGCAAATGGCCCGGCAAAATGCAGAGATCTGGAGTAGCACTGAAGAGACCGTTTCC
CCCAAAATCAAATCACGTAGCTGCGATGATCTCCTGAATGACGACTGCGACAGCTTCCCAGACCCTAAAA
CCAAGTCAGAGAGTATGGGTTCTCTGTTATGTGAAGAAGACTCCAAAGAGAGCTGCCCCATGACATGGGC
GTCCCCCTACATCCAGGAAGTGTGCGGGAACAGCAGATCTAGGCTCAAACACAGGTCAGCCCATAATGCC
CCAGGCTTCCTCAAAATGTACAAGAAAATGCATCGCATCAACCGCAAGGACTTGATGAATTCAGAGGTCA
TTTGCTCGGTGAAATCCAGGATCCTGCAGTACGAGAAGGAGCAACAGCACAGGGGGCTGCTGCACGGATG
GAGCCAGTCTTCCACCGAGGAGGTGCCCAGGGACGTGGTGCCCACTCGCATTTCGGAATTTGAAAAGCTG
ATTCAGAAGTCGAAGTCTATGCCCAATCTAGGAGATGAAATGTTATCTCCTATAACCCTAGAACCCCCAC
AAAATGGTTTGTGTCCCAAGAGGCGATTTTCTATCGAGTCTCTGCTGGAGGAAGAAACTCAGGTTCGTCA
CCCTTCTCAGGGTCAGCGAAGCTGCAAGTCTAACACCCTGGTGCCCATCCACATCGAGGTCACCAGCGAC
GAGCAACCTAGAACACACATGGAGTTTTCCGACAGTGACCAAGATGGGGTTGTGTCCGACCACAGCGACT
ACGTTCACGTCGAAGGGTCGTCCTTTTGTAGTGAAAGTGACTTTGACCACTTTTCATTCACATCCTCTGA
AAGCTTCTACGGATCGAGCCATCACCACCACCATCACCATCACCATCACCGACACCTCATCAGCTCCTGC
AAAGGCCGATGCCCGGCTTCTTACACTCGATTTACCACAATGCTAAAACATGAAAGAGCTAAGCATGAAA
ACATGGACCGACCCAGAAGGCAAGAAATGGATCCTGGCCTGTCTAAGCTTGCATTTCTAGTCAGCCCTGT
GCCTTTCCGAAGGAAAAAAATCCTGACTCCCCAAAAACAGACTGAAAAGGCAAAATGCAAAGCCTCAGTA
GTTGAAGCTCTGGACTCTGCCCTGAAAGACATTTGCGACCAAATAAAAGCCGAAAAGCGGAGGGGAAGCT
TGCCAGACAACAGCATCCTGCACAGGCTTATCAGTGAACTGCTGCCACAGATTCCTGAAAGGAATTCATC
TCTTCATGCTCTCAAAAGGAGCCCCATGCACCAGCCTTTCCACCCACTGCCTCCAGATGGTGCTAGTCAT
TGTCCCCTGTACCAAAATGATTGTGGGAGAATGCCTCACAGTGCCTCTTTCCCTGACGTGGACACAACCA
GCAACTACCACGCACAGGACTATGGGAGTGCACTGAGCCTCCAAGATCACGAGTCCCCTAGAAGTTACTC
ATCTACTCTGACTGACTTGGGCAGAAGTGCATCACGGGAACGAAGGGGAACTCCAGAAAAAGAGAAATTG
CCTGCAAAAGCTGTCTATGATTTCAAAGCTCAGACATCTAAGGAGCTGTCATTTAAGAAAGGAGACACTG
TCTACATCCTCAGGAAAATTGACCAAAACTGGTATGAGGGGGAACACCACGGCAGAGTGGGCATTTTCCC
AATCTCATACGTAGAGAAACTAACACCCCCGGAAAAAGCGCAGCCCGCAAGACCACCACCCCCAGTCCAG
CCCGGAGAGATTGGAGAAGCCATAGCCAAGTACAACTTCAATGCAGACACAAATGTGGAACTCTCCCTGC
GAAAGGGCGACAGGATTATTCTTCTTAAAAGAGTTGACCAAAACTGGTACGAAGGTAAAATCCCAGGAAC
CAACAGACAAGGCATCTTCCCCGTGTCCTATGTCGAGGTTGTCAAGAGGAACGCAAAAGGTGCTGAGGAC
TACCCAGACCCTCCTCTGCCCCACAGCTACTCCAGTGACAGAATTTACACCCTAAGCTCCAATAAGCCAC
AGCGTCCTGGGTTCTCTCATGAAAACATTCAAGGTGGGGGAGAACCGTTTCAGGCTCTGTATAACTATAC
TCCTAGGAACGAAGATGAGCTGGAACTCAGAGAAAGTGATGTCGTTGATGTCATGGAAAAGTGTGACGAC
GGATGGTTTGTGGGAACTTCAAGAAGAACCAAATTCTTTGGTACTTTTCCCGGAAACTATGTCAAAAGGC
TGTGA

Translation (1214 aa):
MNTDSGGCARKRAAMSVTLTSVKRVQSSPNLLAAGRESQSPDSAWRSYNDRNPETLNGDATYSSLAAKGF
RSVRPNLQDKRSPTQSQITINGNSGGAVSPVSYYQRPFSPSAYSLPASLNSSIIMQHGRSLDSAETYSQH
AQSLDGTMGSSIPLYRSSEEEKRVTVIKAPHYPGIGPVDESGIPTAIRTTVDRPKDWYKTMFKQIHMVHK
PDEDTDMYNTPYTYNAGLYNSPYSAQSHPAAKTQTYRPLSKSHSDNGTDAFKEVPSPVPPPHVPPRPRDQ
SSTLKHDWDPPDRKVDTRKFRSEPRSIFEYEPGKSSILQHERPPPKKALDYVQDHSSGVSNEVSIYQSSI
DRSLERPSSSASMAGDFRKRRKSEPAVGPLRGLGDQSSSRTSPGRADLPGSSSTFTKSFISSSPSSPSRA
QGGDDSKMCPPLCSYSGLNGTPSGELECCNAYRQHLDVPGDSQRAITFKNGWQMARQNAEIWSSTEETVS
PKIKSRSCDDLLNDDCDSFPDPKTKSESMGSLLCEEDSKESCPMTWASPYIQEVCGNSRSRLKHRSAHNA
PGFLKMYKKMHRINRKDLMNSEVICSVKSRILQYEKEQQHRGLLHGWSQSSTEEVPRDVVPTRISEFEKL
IQKSKSMPNLGDEMLSPITLEPPQNGLCPKRRFSIESLLEEETQVRHPSQGQRSCKSNTLVPIHIEVTSD
EQPRTHMEFSDSDQDGVVSDHSDYVHVEGSSFCSESDFDHFSFTSSESFYGSSHHHHHHHHHHRHLISSC
KGRCPASYTRFTTMLKHERAKHENMDRPRRQEMDPGLSKLAFLVSPVPFRRKKILTPQKQTEKAKCKASV
VEALDSALKDICDQIKAEKRRGSLPDNSILHRLISELLPQIPERNSSLHALKRSPMHQPFHPLPPDGASH
CPLYQNDCGRMPHSASFPDVDTTSNYHAQDYGSALSLQDHESPRSYSSTLTDLGRSASRERRGTPEKEKL
PAKAVYDFKAQTSKELSFKKGDTVYILRKIDQNWYEGEHHGRVGIFPISYVEKLTPPEKAQPARPPPPVQ
PGEIGEAIAKYNFNADTNVELSLRKGDRIILLKRVDQNWYEGKIPGTNRQGIFPVSYVEVVKRNAKGAED
YPDPPLPHSYSSDRIYTLSSNKPQRPGFSHENIQGGGEPFQALYNYTPRNEDELELRESDVVDVMEKCDD
GWFVGTSRRTKFFGTFPGNYVKRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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