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Report for CCDS57593.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57593.1 Public Mus musculus 7 Or13a20 23 108 98 CCDS HistoryNCBI Gene:258962Re-query CCDS DB by CCDS ID:57593.1Re-query CCDS DB by GeneID:258962See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57593.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000084456.5 ENSMUSP00000081494.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000084456.5Link to Ensembl Protein Viewer:ENSMUSP00000081494.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000084456Re-query CCDS DB by Protein ID:ENSMUSP00000081494
Original member Current member NCBI NM_146960.2 NP_667171.1 Accepted alive Link to Nucleotide Sequence:NM_146960.2Link to Protein Sequence:NP_667171.1Re-query CCDS DB by Nucleotide ID:NM_146960Re-query CCDS DB by Protein ID:NP_667171Link to BLAST:NP_667171.1

Chromosomal Locations for CCDS 57593.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 140651981 140652919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGATGTTGTTGAGTCTCAACCAGACAGGAGTGACAGAGTTTGTGCTGGAAGGGTTCTCAGAGCATCCTG
GTCTAAGACTGTTCCTGACAGGCTGCTTCTTGACCCTCTACATGATGGCTCTAATGGGCAACATTGTGAT
CATTGCTTTGGTCACCTCCAGCACTGGACTCCACAATCCCATGTACTTTTTCCTGTGCAACCTGGCTACC
ACGGATATTGTGTGCACCTCCTCTGTGATTCCTAAGGCCCTGATTGGCCTAGTATCTGAGGAAAACATCA
TCACCTTCAAGGGATGTATGGCCCAGCTCTTCTTCCTTGCATGGGCAACATCCGCAGAGCTGTTGCTGCT
CACGGTCATGGCCTATGACCGCTATGTGGCTATCTGCTTTCCCCTACACTACAGCTCTAGGATGAGCCCA
CAGCTCTGTGGAGCACTGGCCGTGGGTGTATGGTCCATCAGTGCTGTGAATGCATCTGTGCACACTGGCC
TGATGACACGGCTGTCATTCTGTGGACCCAAGGTCATCACCCACTTCTTCTGTGAGATACCCCCACTCCT
CCTGCTCTCCTGTAGTTCCACATACATTAATAGTGTTATGACACTTGTGGCAGATGTCTTTCTGGGAGGC
ATCAACTTCATGTTAACCCTGTTATCTTATGGCTTCATCATTGCCAGCATCCTGCGCATGCGTTCTGCTG
AGGGCAAGAGGAAGGCCTTTTCTACCTGCTCATCCCACCTCATCGTGGTCTCAGTGTACTACTCATCTGT
GTTCTGTGCCTATATCAGTCCTGCTTCCAGCTACAGCCCAGAAAGAAGCAAATTTACCTCAGTGCTATAC
TCGGTCGTCAGTCCAACCCTCAACCCCCTCATCTATACACTGAGGAACAAGGATGTCAAGCTTGCCTTGG
GCAGGATGTTGGCCTCTTTCTCACATTAA

Translation (312 aa):
MMLLSLNQTGVTEFVLEGFSEHPGLRLFLTGCFLTLYMMALMGNIVIIALVTSSTGLHNPMYFFLCNLAT
TDIVCTSSVIPKALIGLVSEENIITFKGCMAQLFFLAWATSAELLLLTVMAYDRYVAICFPLHYSSRMSP
QLCGALAVGVWSISAVNASVHTGLMTRLSFCGPKVITHFFCEIPPLLLLSCSSTYINSVMTLVADVFLGG
INFMLTLLSYGFIIASILRMRSAEGKRKAFSTCSSHLIVVSVYYSSVFCAYISPASSYSPERSKFTSVLY
SVVSPTLNPLIYTLRNKDVKLALGRMLASFSH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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