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Report for CCDS57530.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57530.1 Public Mus musculus 7 Sptbn4 23 108 98 CCDS HistoryNCBI Gene:80297Re-query CCDS DB by CCDS ID:57530.1Re-query CCDS DB by GeneID:80297See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57530.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108362.7 ENSMUSP00000103999.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108362.7Link to Ensembl Protein Viewer:ENSMUSP00000103999.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108362Re-query CCDS DB by Protein ID:ENSMUSP00000103999
Original member Current member EBI ENSMUST00000108363.7 ENSMUSP00000104000.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108363.7Link to Ensembl Protein Viewer:ENSMUSP00000104000.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108363Re-query CCDS DB by Protein ID:ENSMUSP00000104000
Original member Current member EBI ENSMUST00000108364.7 ENSMUSP00000104001.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108364.7Link to Ensembl Protein Viewer:ENSMUSP00000104001.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108364Re-query CCDS DB by Protein ID:ENSMUSP00000104001
Original member Current member NCBI NM_001199234.1 NP_001186163.1 Accepted alive Link to Nucleotide Sequence:NM_001199234.1Link to Protein Sequence:NP_001186163.1Re-query CCDS DB by Nucleotide ID:NM_001199234Re-query CCDS DB by Protein ID:NP_001186163Link to BLAST:NP_001186163.1
Original member Current member NCBI NM_001199235.1 NP_001186164.1 Accepted alive Link to Nucleotide Sequence:NM_001199235.1Link to Protein Sequence:NP_001186164.1Re-query CCDS DB by Nucleotide ID:NM_001199235Re-query CCDS DB by Protein ID:NP_001186164Link to BLAST:NP_001186164.1
Original member Current member NCBI NM_001199236.1 NP_001186165.1 Accepted alive Link to Nucleotide Sequence:NM_001199236.1Link to Protein Sequence:NP_001186165.1Re-query CCDS DB by Nucleotide ID:NM_001199236Re-query CCDS DB by Protein ID:NP_001186165Link to BLAST:NP_001186165.1

Chromosomal Locations for CCDS 57530.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 27357292 27357450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27359743 27359785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27359935 27360108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27361567 27361859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27362396 27362468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27364071 27364690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27365564 27365760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27366408 27366492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27366600 27366738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27367600 27367844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27369189 27369569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27370402 27370606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27371874 27372004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27372097 27372375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27374146 27374235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27375373 27375597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27391433 27391696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27394158 27394280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3726 nt):
ATGCTGATGGCTCGTGATGGCACCCGGGAAGACAGCCACAAGCTGCACAAGAGATGGCTCCGGCACCAGG
CGTTCATGGCTGAGCTGGCTCAGAATAAGGAGTGGCTGGAGAAGATAGAAAGGGAGGGCCAGCAACTGAT
GCAGGAGAAACCGGAGCTGGCAGCCTCTGTGCGCAAGAAATTAGGTGAGATCCGGCAGTGCTGGGCGGAG
CTGGAGAGCACCACACAGGCCAAGGCGCGCCAGCTCTTCGAGGCCAGCAAGGCGGACCAGCTAGTGCAGA
GCTTCGCGGAGCTGGACAAGCGGCTGCTTCACATGGAAAGCCAGCTGCAAGACGTAGACCCCGGTGGGGA
CCTGGCCACTGTCAACAGCCAGCTCAAGAAGTTACAGTCCATGGAGTCTCAGGTGGAGGAGTGGTGCCGA
GAGGTGGGCGAGCTTCAGGCGCAGACGGCGGCGCTTCCGCTGGAGCAGGCGAGCAAGGAGTTGGTGGGGG
AGCGGCAGAGTGCGGTGGGCGAGCGCCTGGTGCGCCTGCTGGAGCCTTTGCAGGAGCGACGCCGCTTGTT
GCTGGCATCCAAGGAGCTGCATCAGGTGGCCCACGACCTGGACGATGAACTGGCTTGGGTTCAAGAGCGG
CTGCCACTGGCCATGCAGACAGAGCGAGGCACTGGCTTGCAGGCTGTCCAGCAGCACATCAAAAAGAACC
AGGGCCTGCGGCGGGAGATCCAGGCTCACGGGCCGCGCTTGGAGGAGGTGCTGGAGCGCGCGGGCGTGCT
GGCCTCGCTGCGCAGCCCAGAGGCCGAAGCGGTGCGCCGTGGCCAAGAGCAGCTGCAGAGCGCCTGGACC
GGGCTGCGGGAAGCGGCCGAACGGCGGCAGCAGACGCTGGACGCCGCCTTCCAGGTGGAACAGTACTACT
TTGACGTGGCTGAGGTGGAGGCATGGCTGGGCGAGCAGGAGCTGCTCATGATGAGTGAGGACAAGGGCAA
GGATGAACAGAGCACCCTGCAGCTGCTCAAGAAGCATTTACAACTGGAACAGGGCGTGGAGAACTATGAG
GAAAGCATCGCCCAGCTGTCACGCCAGTGCCGGGCGCTACTGGAAATGGGACACCCAGACAGTGAGCAAA
TCAGCCGCCGACAGTCCCAAGTGGATCGCCTCTATGTGGCGCTCAAGGAGCTGGGCGAGGAACGCAGGGT
GAGCCTGGAACAGCAGTACTGGCTCTACCAGCTCAGCCGCCAGGTGGATGAGCTGGAACACTGGATAGCC
GAGAAGGAGGTGGTAGCTGGCTCCCCAGAGCTGGGCCAGGACTTCGAACACGTGTCGGTGCTACAGGAGA
AATTCTCAGAGTTTGCCAGTGAGACAGGAACCGCAGGGCGGGAGCGGCTGGCGGCGGTCAACCAGATGGT
GGACGAGCTGATTGAGTGTGGTCACACAGCAGCGGCCACCATGGCTGAGTGGAAGGACGGGCTGAACGAG
GCCTGGGCTGAGCTGCTGGAACTCATGGGCACTCGGGCCCAGCTGCTCGCTGCCTCTCGGGAGCTGCATA
AGTTCTTCAGCGATGCCCGGGAGCTTCAAGGGCAGATTGAGGAGAAGCGGAGGAGGCTGCCCCGCCTGAC
GGCACCACCTGAACCCAGACCCAGTGCCAGCTCCATGCAGCGGACCCTGCGAGCCTTTGAGCACGACCTG
CAGCTCCTCGTGTCCCAGGTACGGCAGCTGCAGGAAGGGGCGGCCCAGCTGCGGACGGTGTACGCTGGCG
AGCACGCCGAGGCCATCGCCAGCCGCGAGCAGGAGGTGTTGCAGGGCTGGAAGGAGCTGCTAGCAGCCTG
TGAAGATGCTCGTCTGCACGTCAGCTCCACGGCCGACGCCCTGCGCTTCCACAGCCAGGCCCGCGACCTG
CTCTCCTGGATGGACGGCATCGCGGGCCAGATCGGGGCAGCTGACAAACCCAGGGATGTGTCATCGGTGG
AGGTGCTTATGAACTACCACCAGGGCCTGAAGACAGAGTTGGAGGCGCGCGTGCCTGAGCTGGCAACCTG
CCAGGAGCTGGGGCGGTCTCTATTACTCAACAAAAGCGCCATGGCTGATGAGATCCAGGCCCAGCTGGAC
AAGCTGGGAAGCCGGAAGGAGGAGGTGTCGGAGAAGTGGGACCGTCACTGGGAGTGGCTGCAGCAGATGC
TGGAGGTACACCAGTTTGCTCAGGAGGCCGTGGTGGCTGACGCCTGGCTGACAGCTCAGGAACCGCTCCT
GCAGAGCCGGGAGCTGGGCAGCAGTGTGGATGAGGTGGAGCAGCTTATCCGGCGACACGAGGCCTTCCGA
AAAGCAGCTGCGGCCTGGGAGGAGAGGTTCAGCTCTCTGCGGCGCTTGACCACGATCGAGAAACTCAAGG
CAGAACAGAGTAAGCAGCCACCCACCCCCTTACTGGGGCGCAAGTTCTTTGGGGACCCCACAGAGCTGGC
GGCCAAGGCAGCGCCTTTGCTGCGTCCAGGGGGCTATGACAGGGGCCTGGAGCCTTTGGCCCGCAGGGCC
TCGGACACGCTGTCAGCGGAGGTGCGGACCCGGGTTGGGTATGTGCGCCAGGAGCTCAAGCCCGAGCGTC
TCCAGCCGCGCATTGACCGGCTGCCAGAGACCTCGGGGAAGGTAGAACCCGCGGCCCCGACAGCCGCAGC
GTTGGACACGACGGACACCCCTGGGACTCCGGCGGCGACGGAGTTGGTCCGGCCCCGGTCGGAGCGCCAG
GAGTTAGCGGATCGTGCGGAGGAGCTGCCACGGAGACGAAGATCAGAACGCCAGGAGTCCGTGGATCAAC
CAGAGGAGACAGCGCGGAGGCGGCGGCCTGAGCGCCAGGAGTCCGCGGACCACGAGGGGCCGCACAGCCT
TACTCTAGGTCGCTACGAGCAGATGGAGAGACGGCGGGAGCGGAGGGAGCGGCGGATAGAACGACAGGAG
TCTAGCGAACAGGAGACTCCCACCAGGGGAGAGCTGGTCAAAGGGAAGGCCACTCTGGCTGATATTGTGG
AGCAACTTCAGGAGAAAGAGGCAGGCCCAGGGATCCCTGCTGGGGTGCCGTCGCTGCCTCAGCCTCGCGA
GCTTCCCCCTGGTCGCCTGCCCAACGGGCTTGAGCCGCCCGAGCGGACACCTCGGCCCGATCGGCCGCGG
GCACGGGACCGGCCCAAGCCGCGCCGGCGGCCACGGCCTCGAGAGGGTGGTGAGGGCGGGGGAAGCCGGC
GCTCGCGCTCCGCCCCTGCCCAGGGAGGCTCCGCCCCCGCGCCGCCACCTCCGCCCACTCACACAGTGCA
GCACGAGGGCTTCCTGCTGCGCAAGCGCGAGCTCGACGCTAACCGCAAGTCGTCCAACCGGTCATGGGTG
AGCCTGTACTGTGTGCTCAGCAAGGGGGAGCTGGGCTTCTACAAGGACTCCAAAGGCCCAGCATCAGGGG
GCACGCATGGTGGGGAACCACTGCTCAGCCTGCACAAAGCCACCAGCGAGGTGGCTAGTGACTACAAGAA
AAAGAAGCATGTCTTCAAGCTCCAGACCCAGGATGGCAGTGAGTTCTTGCTCCAGGCTAAAGATGAGGAG
GAGATGAACGGCTGGCTGGAGGCTGTGGCTAACTCCGTGGCAGAACACGCCGAGATCGCCCGATGGGGTC
AGACACTACCTACCACATCATCCACAGATGAGGGCAACCCCAAGCGTGAGGGCGGGGAGCGTAGGGCCAG
CGGGCGCCGGAAGTGA

Translation (1241 aa):
MLMARDGTREDSHKLHKRWLRHQAFMAELAQNKEWLEKIEREGQQLMQEKPELAASVRKKLGEIRQCWAE
LESTTQAKARQLFEASKADQLVQSFAELDKRLLHMESQLQDVDPGGDLATVNSQLKKLQSMESQVEEWCR
EVGELQAQTAALPLEQASKELVGERQSAVGERLVRLLEPLQERRRLLLASKELHQVAHDLDDELAWVQER
LPLAMQTERGTGLQAVQQHIKKNQGLRREIQAHGPRLEEVLERAGVLASLRSPEAEAVRRGQEQLQSAWT
GLREAAERRQQTLDAAFQVEQYYFDVAEVEAWLGEQELLMMSEDKGKDEQSTLQLLKKHLQLEQGVENYE
ESIAQLSRQCRALLEMGHPDSEQISRRQSQVDRLYVALKELGEERRVSLEQQYWLYQLSRQVDELEHWIA
EKEVVAGSPELGQDFEHVSVLQEKFSEFASETGTAGRERLAAVNQMVDELIECGHTAAATMAEWKDGLNE
AWAELLELMGTRAQLLAASRELHKFFSDARELQGQIEEKRRRLPRLTAPPEPRPSASSMQRTLRAFEHDL
QLLVSQVRQLQEGAAQLRTVYAGEHAEAIASREQEVLQGWKELLAACEDARLHVSSTADALRFHSQARDL
LSWMDGIAGQIGAADKPRDVSSVEVLMNYHQGLKTELEARVPELATCQELGRSLLLNKSAMADEIQAQLD
KLGSRKEEVSEKWDRHWEWLQQMLEVHQFAQEAVVADAWLTAQEPLLQSRELGSSVDEVEQLIRRHEAFR
KAAAAWEERFSSLRRLTTIEKLKAEQSKQPPTPLLGRKFFGDPTELAAKAAPLLRPGGYDRGLEPLARRA
SDTLSAEVRTRVGYVRQELKPERLQPRIDRLPETSGKVEPAAPTAAALDTTDTPGTPAATELVRPRSERQ
ELADRAEELPRRRRSERQESVDQPEETARRRRPERQESADHEGPHSLTLGRYEQMERRRERRERRIERQE
SSEQETPTRGELVKGKATLADIVEQLQEKEAGPGIPAGVPSLPQPRELPPGRLPNGLEPPERTPRPDRPR
ARDRPKPRRRPRPREGGEGGGSRRSRSAPAQGGSAPAPPPPPTHTVQHEGFLLRKRELDANRKSSNRSWV
SLYCVLSKGELGFYKDSKGPASGGTHGGEPLLSLHKATSEVASDYKKKKHVFKLQTQDGSEFLLQAKDEE
EMNGWLEAVANSVAEHAEIARWGQTLPTTSSTDEGNPKREGGERRASGRRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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