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Report for CCDS57220.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57220.1 Public Mus musculus 3 Arhgef2 23 108 98 CCDS HistoryNCBI Gene:16800Re-query CCDS DB by CCDS ID:57220.1Re-query CCDS DB by GeneID:16800See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57220.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000177498.7 ENSMUSP00000134840.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000177498.7Link to Ensembl Protein Viewer:ENSMUSP00000134840.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000177498Re-query CCDS DB by Protein ID:ENSMUSP00000134840
Original member NCBI NM_001198911.1 NP_001185840.1 Updated not alive Link to Nucleotide Sequence:NM_001198911.1Link to Protein Sequence:NP_001185840.1Re-query CCDS DB by Nucleotide ID:NM_001198911Re-query CCDS DB by Protein ID:NP_001185840
Current member NCBI NM_001198911.2 NP_001185840.1 Accepted alive Link to Nucleotide Sequence:NM_001198911.2Link to Protein Sequence:NP_001185840.1Re-query CCDS DB by Nucleotide ID:NM_001198911Re-query CCDS DB by Protein ID:NP_001185840Link to BLAST:NP_001185840.1

Chromosomal Locations for CCDS 57220.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 88616637 88616654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88629787 88629931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88631911 88631978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88632276 88632333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88632913 88633042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88633258 88633367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88633500 88633646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88634410 88634660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88634983 88635108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88635601 88635718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88635855 88636103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88638271 88638347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88639323 88639492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88640283 88640350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88642426 88642626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88642926 88643039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88643149 88643216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88643345 88643380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88643562 88643612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88643790 88644233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88646177 88646360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88646790 88646863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2907 nt):
ATGACCGGCAGGGACAAGACCCGGGAAAAGGAGAAGATGAAGGAAGCTAAAGATGCCCGCTATACCAACG
GCCACCTCTTCACCACCATCTCCGTCTCCGGCATGACCATGTGCTATGCCTGTAACAAGAGCATCACAGC
CAAGGAAGCCCTCATTTGTCCTACATGTAACGTGACCATCCACAACCGCTGTAAAGACACCCTGGCCAAC
TGTACCAAGGTCAAGCAGAAGCAACAGAAAGCTGCACTGCTGAGGAACAACACTGCTTTGCAGTCTGTCT
CCCTTCGAACGACCACCAGAGAGCGGCCAACGTCTGCCATTTACCCTTCCGACAGCTTCCGGCAGTCCCT
CCTGGGTTCTCGGCGGGGCCTCTCCTCCTTATCTTTGGCCAAAAGTGTTTCCACTACCAACATTGCTGGA
CATTTCAATGATGAGTCTCCTCTGGGGCTGCGTCAGATCCTCTCCCAGTCCACAGACTCCCTCAACATGC
GGAACCGAACCCTGTCCGTGGAATCCCTTATTGATGAAGGTGTAGAAGTGTTCTACAATGAGCTGATGAG
CGACTTTGAGATGGATGAGAAGGACTTTGAGGCGGATTCTTGGAGCCTTGCCGTGGACAGCAGCTTCCTG
CAGCAGCACAAAAAGGAAGTGATGAAGAAGCAAGATGTCATCTATGAGCTGATCCAGACAGAGCTGCACC
ACGTGAGAACCTTGAAGATTATGACCCGCCTCTTTCGCACTGGGATGCTGGAAGAGTTGCAGATGGAGCC
AGAAGTGGTCCAGGGCCTGTTCCCCTGCGTGGATGAACTCAGTGACATTCACACACGTTTCCTTAATCAG
CTTCTGGAACGGCGGCGCCAGGCTCTATGTCCAGGCAGCACCCGGAACTTTGTCATCCATCGTTTGGGTG
ACTTGCTCATCAGTCAGTTCTCAGGTTCCAATGCTGAGCAGATGCGCAAGACCTACTCAGAGTTCTGCAG
CCGCCACACCAAGGCCTTAAAGCTCTATAAGGAGCTGTATGCTCGAGACAAACGCTTCCAACAGTTCATC
CGGAAAATGACCCGCTCAGCTGTGTTGAAGCGGCATGGAGTTCAGGAATGCATTCTCCTGGTGACTCAGC
GGATCACCAAATACCCTGTGCTCATCAACAGAATCCTGCAGAATTCCCACGGGGTTGAAGAAGAGTACCA
AGACTTGGCGTCAGCCCTAGGACTAGTGAAGGAGTTGTTGTCCAATGTGGACCAGGATGTGCACGAGCTG
GAGAAAGAGGCCCGCCTGCAGGAGATTTACAACCGAATGGATCCCCGGGCTCAGACCCCCGTACCTGGCA
AGGGCCCCTTCGGCCGAGATGAACTTTTACGGAGAAAACTTATCCATGAAGGCTGCCTGCTCTGGAAGAC
AGCCACAGGCCGCTTCAAAGATGTCCTGTTGCTGCTGATGACAGATGTGCTCGTGTTTCTCCAGGAAAAG
GACCAGAAATACATTTTCACGTCTCTGGACAAGCCCTCAGTGGTGTCCTTGCAGAACCTCATCGTAAGAG
ACATAGCCAACCAGGCGAAAGGGATGTTTCTGATTAGTTCTGGACCGCCTGAGATGTATGAGGTGCATGC
AGCGTCCCGAGACGACCGGACTACCTGGATCCGTGTCATCCAGCAGAGTGTGCGCCTGTGCCCGTCCAGG
GAGGACTTTCCTCTGATCGAGACAGAGGATAAGGCGTATCTCCGGAGGATCAAGACGAAACTGCAGCAGA
AAAACCAGGCGCTAGTGGAGCTGCTACAGAAGAATGTTGAGCTGTTTGCCGAGATGGTCCACTTCCAGGC
CTTAAAGGCTGGCTTCGTTGGAATGCCCCCACCCGCCCTGCCCAGGGGCCTTTTCCGTCTTGAGTCCTTT
GAGTCCCTCCGAGGCGAGCGCCTGCTAAAGGATGCCCTCCGTGAAGTGGAAGGCCTGAAAGACCTGCTGT
TGGGCCCATGTGTGGACCTGCCTATGACATCCCGAGAACCAGCCTTACCCTTGGACTCTGACAGCGGTAG
CTGTCCTGGGGTCACTGCCAATGGAGAGGCCAGAACCTTCAATGGCTCCATTGAACTCTGTAGAGCAGAC
TCGGATTCCAGCCAGAAGGATCGGAATGGAAATCAGTTGAGATCACCACAGGAGGAGGTGTTACAGCCAT
TGATCAATCTTTATGGACTTCTACATGGCCTGCAGGCTGTTGTGGTCCAGCAGGAAAGACTGATGGAAGC
CCTGTTCCCTGAGGGCCCTGAACGGTGGGAAAAGCTATCCCGAGCCAACTCTCGGGATGGTGAAGCTGGC
CGGGCTGCGGTTGCTTCTGTAACTCCTGAGAAGCAGGCCACGGAGCTGGCACTACTGCAGAGGCAACACA
CCCTGTTGCAGGAAGAGCTGCGGCGCTGCCAGCGGCTCGGGGAAGAGCGGGCAACTGAAGCTGGCAGCCT
GGAGGCCAGGCTCCGAGAGAGCGAGCAAGCCCGGGCCCTGCTGGAGCGGGAGGCTGAAGAGATCCGCCGG
CAGCTTGCAGCCTTGGGCCAAAACGAGCCACTCCCGGCAGAAGCGCCCTGGGCTCGCAGGCCTCTGGACC
CACGGCGCCGCAGCCTTCCAGCGGGCGACGCTTTATACTTGAGCTTCAATCCCCCCCAGCCCAGTCGAGG
CCATGACCGCCTGGATTTGCCTGTGACTGTTCGTTCCCTCCACCGACCCTTTGATGACCGAGAGGCGCAA
GAACTTGGTAGCCCCGAGGATCGACTACAGGACAGCAGTGACCCTGATACTGGTAGTGAGGAGGAAGTCA
GTAGCCGCCTGTCTCCACCTCACAGTCCTCGAGACTTCACCCGAATGCAGGACATTCCTGAAGAGACAGA
AAGCCGAGATGGGGAGCCCACAGCTTCAGAGAGCTAA

Translation (968 aa):
MTGRDKTREKEKMKEAKDARYTNGHLFTTISVSGMTMCYACNKSITAKEALICPTCNVTIHNRCKDTLAN
CTKVKQKQQKAALLRNNTALQSVSLRTTTRERPTSAIYPSDSFRQSLLGSRRGLSSLSLAKSVSTTNIAG
HFNDESPLGLRQILSQSTDSLNMRNRTLSVESLIDEGVEVFYNELMSDFEMDEKDFEADSWSLAVDSSFL
QQHKKEVMKKQDVIYELIQTELHHVRTLKIMTRLFRTGMLEELQMEPEVVQGLFPCVDELSDIHTRFLNQ
LLERRRQALCPGSTRNFVIHRLGDLLISQFSGSNAEQMRKTYSEFCSRHTKALKLYKELYARDKRFQQFI
RKMTRSAVLKRHGVQECILLVTQRITKYPVLINRILQNSHGVEEEYQDLASALGLVKELLSNVDQDVHEL
EKEARLQEIYNRMDPRAQTPVPGKGPFGRDELLRRKLIHEGCLLWKTATGRFKDVLLLLMTDVLVFLQEK
DQKYIFTSLDKPSVVSLQNLIVRDIANQAKGMFLISSGPPEMYEVHAASRDDRTTWIRVIQQSVRLCPSR
EDFPLIETEDKAYLRRIKTKLQQKNQALVELLQKNVELFAEMVHFQALKAGFVGMPPPALPRGLFRLESF
ESLRGERLLKDALREVEGLKDLLLGPCVDLPMTSREPALPLDSDSGSCPGVTANGEARTFNGSIELCRAD
SDSSQKDRNGNQLRSPQEEVLQPLINLYGLLHGLQAVVVQQERLMEALFPEGPERWEKLSRANSRDGEAG
RAAVASVTPEKQATELALLQRQHTLLQEELRRCQRLGEERATEAGSLEARLRESEQARALLEREAEEIRR
QLAALGQNEPLPAEAPWARRPLDPRRRSLPAGDALYLSFNPPQPSRGHDRLDLPVTVRSLHRPFDDREAQ
ELGSPEDRLQDSSDPDTGSEEEVSSRLSPPHSPRDFTRMQDIPEETESRDGEPTASES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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