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Report for CCDS57161.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57161.1 Public Mus musculus 2 Cacfd1 23 108 98 CCDS HistoryNCBI Gene:381356Re-query CCDS DB by CCDS ID:57161.1Re-query CCDS DB by GeneID:381356See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57161.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114004.7 ENSMUSP00000109637.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114004.7Link to Ensembl Protein Viewer:ENSMUSP00000109637.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114004Re-query CCDS DB by Protein ID:ENSMUSP00000109637
Original member Current member NCBI NM_001243240.1 NP_001230169.1 Accepted alive Link to Nucleotide Sequence:NM_001243240.1Link to Protein Sequence:NP_001230169.1Re-query CCDS DB by Nucleotide ID:NM_001243240Re-query CCDS DB by Protein ID:NP_001230169Link to BLAST:NP_001230169.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001230169.1 106 Q8BG21-3 106 100% 0 0

Chromosomal Locations for CCDS 57161.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 27009988 27010105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27014093 27014165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27015484 27015613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (321 nt):
ATGAGCGGCTCGGGCGCCGCCGGAGCGGCCGCGGGCCCAGCCCCGCCGGCACAGGAAGAGGGCATGACTT
GGTGGTACCGCTGGCTGTGCCGCCTGGCGGGAGTGCTAGGAGCGGTGTCCTGTGCCATCTCTGGACTCTT
CAACTGCGTCACTATCCACCCTCTGAACATCGCAGCTGGCGTGTGGATGATCATGAACGCCTTCATCCTG
TTGTTGTGCGAGGCTCCCTTCTGCTGCCAGTTTGTGGAGTTTGCAAACACAGTAGCTGAGAAGGTTGACC
GGCTGCGCTCCTGGCAGAAGGCTGTCTTCTACTGCGGGTGA

Translation (106 aa):
MSGSGAAGAAAGPAPPAQEEGMTWWYRWLCRLAGVLGAVSCAISGLFNCVTIHPLNIAAGVWMIMNAFIL
LLCEAPFCCQFVEFANTVAEKVDRLRSWQKAVFYCG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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