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Report for CCDS56890.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56890.1 Public Mus musculus 13 Rslcan18 23 108 98 CCDS HistoryNCBI Gene:432770Re-query CCDS DB by CCDS ID:56890.1Re-query CCDS DB by GeneID:432770See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56890.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000091526.3 ENSMUSP00000089111.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000091526.3Link to Ensembl Protein Viewer:ENSMUSP00000089111.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000091526Re-query CCDS DB by Protein ID:ENSMUSP00000089111
Original member Current member NCBI NM_001256052.1 NP_001242981.1 Accepted alive Link to Nucleotide Sequence:NM_001256052.1Link to Protein Sequence:NP_001242981.1Re-query CCDS DB by Nucleotide ID:NM_001256052Re-query CCDS DB by Protein ID:NP_001242981Link to BLAST:NP_001242981.1

Chromosomal Locations for CCDS 56890.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 67098164 67099047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 67102043 67102135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 67102698 67102823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 67107568 67107619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 67107970 67108053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 67112188 67112265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 67113916 67113981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1383 nt):
ATGGAAATGGGCAGGTGGAGGAAGTCTCAGATCAGAGGTCAGGAAGCTCAGCTTGGAAGAATTCAGGAGT
CAGTGCGAAAGACTTCCAGGAACGCAGAGAAGAGGATTTCCACAGAGCTTGTGCTCCTGCTCAACTGTGA
GCAGGTTTATAAACTCTTACATTCTAGAAGAACGAGGAGAGGAAAAGGAATGGACAGGGACGATGAACCT
ACACTCGAGAAGGGCAAGGCAGTCAGTCCACAGTGGCCTGAGAAGAGCAGACTCCTATCAGCATCAGTTG
AAATGCTGTCATTCAGGGATGTGGCCATTGATTTCTCTGCAGGAGAGTTGGAATGCCTGGAGCCTGCTCA
GTGGGATCTGTACAGGGATGTGATGCTGGAGAATTTCAGCCACCTTGTGTTCCTGGGCTTTTCTTTCTCT
AAGCCGTTATTGGTCAGATTTCTGGAGAAGAACCAGGAGCTTCGGAATGTGAAGAGGAAAGCAGCAACTG
TGCCCCGAGGAAAAAAACCCTATAAATGTAAAGAATGTGGCAAAGCCTTTGCTAAGAGCTCGGTCCTTAC
TCAACACCTGAGAATTCACACGGGAGAGAAACCCTACACGTGTGACATATGCGACAAGGCCTTTTCTCTG
CCCTCCATACTTCATAACCACCAGAAAATTCACACTGGAGAAAAGCCTTACAAATGTGAAGTATGTGGCA
AGGCCTTTCTTATGCCCTCCACACTTACTAACCACCAGAAAATTCACACTGGGGAGAAGCCTTACAAATG
TGAAGTATGTGGCAAGGCCTTTCTTATGCCCTCCACACTTACTAACCACCAGAAAATTCACACTGGGGAG
AAGCCCTACGAGTGTGAAGTATGTGGCAAAAAGTTTTCCAGTCCTGCAGACTTTACAAAACACCAAAGAG
TTCATACCGGAGAGAAACCATACAAGTGCGAAGAGTGTAAAAAACCCTTCAGCAATCTTTCAGCCCTCAG
TAGACACAAAGTAGTTCACACTGGAGAGAAACGCTACACCTGTGAGAAATGTGGCAAAGCCTACAGCAGG
AGTTATCACCTCAGTCGACACAAGAAAGCTCATAGTGGACAGAAATCCTACAAGTGCAAAGAATGTGGCA
AAATGTTTTACTATTCTTCAGACCTTAAAAGACACCAGAGAATTCATTCTGAGGAGAGGCCCTATGAATG
TGAAGAATGTGGCAAAGCCTTTCCTAGTCCTTCAGACGTTACTCAGCATGCGAGAACCCATAAGAGAATG
AAGCAGTACACCTGTGATGAGTGTGGAGAGTGCTTTACTATTCAGACAACATTTTCCAACCTCCGTAAAA
TTCGTCTTGAGGGAAAACCGTCTGAATGTGAGAGATGTCGAAAGGACTTTTAA

Translation (460 aa):
MEMGRWRKSQIRGQEAQLGRIQESVRKTSRNAEKRISTELVLLLNCEQVYKLLHSRRTRRGKGMDRDDEP
TLEKGKAVSPQWPEKSRLLSASVEMLSFRDVAIDFSAGELECLEPAQWDLYRDVMLENFSHLVFLGFSFS
KPLLVRFLEKNQELRNVKRKAATVPRGKKPYKCKECGKAFAKSSVLTQHLRIHTGEKPYTCDICDKAFSL
PSILHNHQKIHTGEKPYKCEVCGKAFLMPSTLTNHQKIHTGEKPYKCEVCGKAFLMPSTLTNHQKIHTGE
KPYECEVCGKKFSSPADFTKHQRVHTGEKPYKCEECKKPFSNLSALSRHKVVHTGEKRYTCEKCGKAYSR
SYHLSRHKKAHSGQKSYKCKECGKMFYYSSDLKRHQRIHSEERPYECEECGKAFPSPSDVTQHARTHKRM
KQYTCDECGECFTIQTTFSNLRKIRLEGKPSECERCRKDF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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