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Report for CCDS56883.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56883.1 Public Mus musculus 13 Hk3 23 108 98 CCDS HistoryNCBI Gene:212032Re-query CCDS DB by CCDS ID:56883.1Re-query CCDS DB by GeneID:212032See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56883.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000153665.7 ENSMUSP00000115227.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000153665.7Link to Ensembl Protein Viewer:ENSMUSP00000115227.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000153665Re-query CCDS DB by Protein ID:ENSMUSP00000115227
Original member Current member NCBI NM_001206392.1 NP_001193321.1 Accepted alive Link to Nucleotide Sequence:NM_001206392.1Link to Protein Sequence:NP_001193321.1Re-query CCDS DB by Nucleotide ID:NM_001206392Re-query CCDS DB by Protein ID:NP_001193321Link to BLAST:NP_001193321.1

Chromosomal Locations for CCDS 56883.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 55006171 55006315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55006403 55006636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55006806 55006961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55007072 55007255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55008675 55008774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55008953 55009048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55010697 55010816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55010896 55011035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55011148 55011443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55012027 55012260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55012442 55012597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55013228 55013411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55013487 55013586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55014232 55014327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55014427 55014546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55014626 55014780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55014973 55015060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2604 nt):
ATGGAGCAGGCACTGAAGGGACAGGACAGTCCCGCTCCTTCTGTCCGGATGCTGCCCACATACGTGAGGT
CCACACCACACGGCACCGAGCAAGGGGATTTCCTGGTGCTGGAGCTGGGGGCCACAGGAGCATCACTACG
TGTGTTGTGGGTAACACTGACAGGCACCAAAGAATGCCGGGTGGAGCCCAGGAGCCGGGAGTTTGTGATT
CCTCAAGAGGTGATCCTAGGTGCTGGCCAGCAGCTCTTTGACTTTGCTGCCCGATGCCTCTCTGAATTCC
TGGATGCATACCCCGTGGAGAATCAGGGTCTGAAGCTTGGGTTCAATTTCTCTTTTCCTTGTCACCAGAC
AGGCTTGGACAGGAGCACCCTCATTTCCTGGACAAAAGGTTTTAGGTGCAGCGGCGTGGAAGGCCAGGAT
GTGGTCCAGTTGCTAAGAGATGCCATTCAGAGGCAGGGGACCTACAGGATTGATGTGGTAGCCATGGTGA
ATGACACGGTGGGCACCATGATGGGCTGTGAGCTGGGCACCAGGCCGTGTGAAGTCGGGCTGATTGTAGA
CACCGGTACCAACGCGTGCTACATGGAGGAGGCGCGGCACGTGGCCGCTCTGGATGAGGACCGCGGCCGC
ACCTGTGTCAGCATCGAGTGGGGCTCCTTCTATGACGAAGATGCTCTAGGGCCAGTACTGACCACCTTCG
ACTCTGCCCTGGACCGCGAGTCCCTGACTCCTGGTGCTCAAAGGTTTGAGAAGATGATTGGAGGCCTTTA
CCTGGGTGAGCTGGTGAGGCTGGTTCTGGTCCACTTGACCCAGCACGGGGTCCTCTTTGATGGCTGCGCC
TCTCCTGCGTTGCTGAGTCAAGGCTGTATCCTCCTGGACCACGTGGCTGAGATGGAGGACACCGCCACTG
GGACAGCCCGCGTCCACACCATCCTGCAGGACTTGGGTCTGAGCCCTCGGGCCTCAGATGCTGAACTGGT
GCAATATGTGTGCGTGGCTGTGTGCACACGGGCTGCCCAGCTCTGTGCGGCTGCCCTGGCTGCAGTCCTC
TCCCGCCTCCAGCACAGCAGGGAGCAGCAGACATTGCAAGTGGCTGTGGCCACTGGAGGGCGAGTGTTTG
AACGACACCCCAGGTTCCTCCGAATCCTAAAGGAGACGGTAACACTCCTGGCCCCAAACTGTGATGTCTC
CTTCATCCCCTCTGTGGATGGTGGTGGCCGGGGTGTGGCAATGGTGACAGCTGTGGCTGCCCGCCTGGCT
GCTCACAGGCGCATCCTGGAAGAGACCCTGGCACCATTTCAGCTGACCTTGGAGCAGATGACAGTGGTGC
AGGCACAAATGCGGGAAGCCATGATCAGGGGGCTTCAAGGAGAGGCCTCCTCCCTCCGCATGCTGCCCAC
TTACGTCCGAGCGACGCCCGACGGCAGCGAGCGAGGTGATTTCCTGGCCTTGGACCTAGGGGGCACCAAC
TTCCGGGTCCTGTTGGTACGAGTGGCGGAGGGCAGTGTGCAGATCATCAACCAGGTCTACTCCATTCCTG
AGTGTAGAGCCCAGGGCTCTGGACAGAAGCTCTTTGACCATATTGTGGACTGCATCGTGGACTTCCAGAA
GAGGCAGGGCCTTAGTGGACAGAGCCTACCCCTGGGTTTCACCTTCTCTTTCCCATGCAAGCAGCTTGGC
CTGGACCAGGGCATCCTCCTGAATTGGACTAAGGGGTTCAATGCATCAGGCTGTGAGGGCCAGGATGTTG
TGTATCTATTACGGGAAGCCATTAGGCGCAGACAGGCAGTGGAGCTGAATGTGGTTGCCATTGTCAATGA
CACGGTGGGGACCATGATGTCCTGTGGCTATGATGATCCCCGTTGTGAGATGGGCCTCATTGTCGGAACC
GGCACCAACGCCTGTTACATGGAAGAGCTCCGCAATGTGGCAAGTGTGCCTGGGGACTCGGGCCTCATGT
GCATCAACATGGAGTGGGGTGCCTTTGGGGATGATGGCTCACTGGGCACACTCAGCACCCGCTTTGACAC
CAGTGTGGACCAGGCATCCATCAATCCAGGCAAACAGAGGTTTGAGAAAATGATCAGCGGTATGTACTTG
GGGGAGATCGTCCGCCATATCCTCCTGCACTTAACCAATCTCGGAGTTCTCTTCCGAGGCCAGAAGACTC
AATGCCTTCAGGCCAGGGACATCTTCAAGACTAAGTTCCTCTCTGAGATCGAAAGTGATAGCCTGGCCCT
GCGTCAGGTCCGAGCCATCCTGGAAGATCTGGGGCTGACTCTGACATCTGATGACGCCTTGATGGTCCTG
GAAGTGTGCCAGGCTGTGTCTCGCAGGGCTGCCCAACTCTGTGGGGCAGGTGTGGCTGCCGTGGTGGAGA
AGATTCGGGAGAACCGGGGCCTGCAGGAGCTGACAGTGTCTGTGGGAGTAGATGGGACACTCTACAAGCT
ACATCCTCACTTCTCCAAGCTGGTGTCGGCAACAGTCCGGAAGCTAGCCCCTCAGTGCACCGTCACCTTT
TTGCAGTCGGAGGATGGGTCTGGCAAAGGCGCAGCTTTGGTTACTGCTGTTGCTTGTCGCCTTACCCAGA
TGGCCCACGTCTGA

Translation (867 aa):
MEQALKGQDSPAPSVRMLPTYVRSTPHGTEQGDFLVLELGATGASLRVLWVTLTGTKECRVEPRSREFVI
PQEVILGAGQQLFDFAARCLSEFLDAYPVENQGLKLGFNFSFPCHQTGLDRSTLISWTKGFRCSGVEGQD
VVQLLRDAIQRQGTYRIDVVAMVNDTVGTMMGCELGTRPCEVGLIVDTGTNACYMEEARHVAALDEDRGR
TCVSIEWGSFYDEDALGPVLTTFDSALDRESLTPGAQRFEKMIGGLYLGELVRLVLVHLTQHGVLFDGCA
SPALLSQGCILLDHVAEMEDTATGTARVHTILQDLGLSPRASDAELVQYVCVAVCTRAAQLCAAALAAVL
SRLQHSREQQTLQVAVATGGRVFERHPRFLRILKETVTLLAPNCDVSFIPSVDGGGRGVAMVTAVAARLA
AHRRILEETLAPFQLTLEQMTVVQAQMREAMIRGLQGEASSLRMLPTYVRATPDGSERGDFLALDLGGTN
FRVLLVRVAEGSVQIINQVYSIPECRAQGSGQKLFDHIVDCIVDFQKRQGLSGQSLPLGFTFSFPCKQLG
LDQGILLNWTKGFNASGCEGQDVVYLLREAIRRRQAVELNVVAIVNDTVGTMMSCGYDDPRCEMGLIVGT
GTNACYMEELRNVASVPGDSGLMCINMEWGAFGDDGSLGTLSTRFDTSVDQASINPGKQRFEKMISGMYL
GEIVRHILLHLTNLGVLFRGQKTQCLQARDIFKTKFLSEIESDSLALRQVRAILEDLGLTLTSDDALMVL
EVCQAVSRRAAQLCGAGVAAVVEKIRENRGLQELTVSVGVDGTLYKLHPHFSKLVSATVRKLAPQCTVTF
LQSEDGSGKGAALVTAVACRLTQMAHV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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