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Report for CCDS56735.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56735.1 Public Mus musculus 10 Reep6 23 108 98 CCDS HistoryNCBI Gene:70335Re-query CCDS DB by CCDS ID:56735.1Re-query CCDS DB by GeneID:70335See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56735.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105355.7 ENSMUSP00000100992.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105355.7Link to Ensembl Protein Viewer:ENSMUSP00000100992.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105355Re-query CCDS DB by Protein ID:ENSMUSP00000100992
Original member Current member NCBI NM_001204931.1 NP_001191860.1 Accepted alive Link to Nucleotide Sequence:NM_001204931.1Link to Protein Sequence:NP_001191860.1Re-query CCDS DB by Nucleotide ID:NM_001204931Re-query CCDS DB by Protein ID:NP_001191860Link to BLAST:NP_001191860.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001191860.1 174 Q9JM62-2 174 100% 0 0

Chromosomal Locations for CCDS 56735.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 80330231 80330345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80333503 80333596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80333689 80333827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80333966 80334134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80335110 80335117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (525 nt):
ATGGACGGTCTGCGCCAGCGCTTCGAACGTTTTCTGGAACAGAAGAACGTGGCCACCGAAGCGCTCGGGG
CGCTCGAAGCAAGGACCGGTGTAGAGAAGCGGTATCTCGCCGCGGGAGCCCTCGCCCTTCTAGGCCTGTA
TCTTCTGTTCGGTTACGGGGCCTCTCTACTGTGCAATGTCATCGGATTTGTATACCCCGCATATGCTTCA
GTCAAAGCTATCGAGAGCCCAAGCAAGGAAGACGACACTGTGTGGCTAACCTACTGGGTGGTGTACGCCC
TGTTCGGTCTGGTCGAATTCTTCAGCGATCTACTCCTGTTCTGGTTCCCTTTCTACTACGCGGGCAAGTG
CGCCTTCCTGTTATTTTGCATGACGCCCGGACCCTGGAACGGGGCATTACTACTATACCATCGCGTCATA
AGACCACTCTTTCTAAAGCACCACATGGCTCTAGACAGCGCCGCGAGCCAGCTAAGCGGAAGAGCATTGG
ACCTAGCAGCTGGGATAACCCGGGACGCCAAGTAA

Translation (174 aa):
MDGLRQRFERFLEQKNVATEALGALEARTGVEKRYLAAGALALLGLYLLFGYGASLLCNVIGFVYPAYAS
VKAIESPSKEDDTVWLTYWVVYALFGLVEFFSDLLLFWFPFYYAGKCAFLLFCMTPGPWNGALLLYHRVI
RPLFLKHHMALDSAASQLSGRALDLAAGITRDAK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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