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Report for CCDS5650.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5650.1 Public Homo sapiens 7 TAC1 24 110 108 CCDS HistoryNCBI Gene:6863Re-query CCDS DB by CCDS ID:5650.1Re-query CCDS DB by GeneID:6863See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5650.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000350485.8 ENSP00000289576.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000350485.8Link to Ensembl Protein Viewer:ENSP00000289576.4Re-query CCDS DB by Nucleotide ID:ENST00000350485Re-query CCDS DB by Protein ID:ENSP00000289576
Original member Current member NCBI NM_013996.3 NP_054702.1 Accepted alive Link to Nucleotide Sequence:NM_013996.3Link to Protein Sequence:NP_054702.1Re-query CCDS DB by Nucleotide ID:NM_013996Re-query CCDS DB by Protein ID:NP_054702Link to BLAST:NP_054702.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_054702.1 111 P20366-2 111 100% 0 0

Chromosomal Locations for CCDS 5650.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 97732613 97732735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 97733723 97733819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 97734248 97734292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 97734826 97734849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 97739874 97739920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (336 nt):
ATGAAAATCCTCGTGGCCTTGGCAGTCTTTTTTCTTGTCTCCACTCAGCTGTTTGCAGAAGAAATAGGAG
CCAATGATGATCTGAATTACTGGTCCGACTGGTACGACAGCGACCAGATCAAGGAGGAACTGCCGGAGCC
CTTTGAGCATCTTCTGCAGAGAATCGCCCGGAGACCCAAGCCTCAGCAGTTCTTTGGATTAATGGGCAAA
CGGGATGCTGATTCCTCAATTGAAAAACAAGTGGCCCTGTTAAAGGCTCTTTATGGACATGGCCAGATCT
CTCACAAAATGGCTTATGAAAGGAGTGCAATGCAGAATTATGAAAGAAGACGTTAA

Translation (111 aa):
MKILVALAVFFLVSTQLFAEEIGANDDLNYWSDWYDSDQIKEELPEPFEHLLQRIARRPKPQQFFGLMGK
RDADSSIEKQVALLKALYGHGQISHKMAYERSAMQNYERRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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