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Report for CCDS56271.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56271.1 Public Homo sapiens 3 ILDR1 24 110 108 CCDS HistoryNCBI Gene:286676Re-query CCDS DB by CCDS ID:56271.1Re-query CCDS DB by GeneID:286676See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56271.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000344209.10 ENSP00000345667.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000344209.10Link to Ensembl Protein Viewer:ENSP00000345667.5Re-query CCDS DB by Nucleotide ID:ENST00000344209Re-query CCDS DB by Protein ID:ENSP00000345667
Original member Current member NCBI NM_001199799.2 NP_001186728.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001199799.2Link to Protein Sequence:NP_001186728.1Re-query CCDS DB by Nucleotide ID:NM_001199799Re-query CCDS DB by Protein ID:NP_001186728Link to BLAST:NP_001186728.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186728.1 546 Q86SU0-1 546 100% 0 0

Chromosomal Locations for CCDS 56271.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 121988367 121988408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121993150 121993970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121994182 121994313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122001308 122001454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122001745 122001864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122005244 122005393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122006991 122007161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122022020 122022077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1641 nt):
ATGGCATGGCCCAAACTGCCCGCACCTTGGCTGCTGCTCTGCACCTGGCTCCCAGCAGGGTGCCTGTCCT
TGCTTGTGACGGTCCAGCACACAGAACGCTATGTCACCCTGTTTGCCTCTATCATCCTCAAATGTGACTA
CACCACCTCTGCCCAGCTCCAGGACGTGGTGGTGACATGGCGCTTCAAGTCCTTCTGCAAGGACCCTATC
TTTGACTACTACTCAGCGTCATACCAGGCAGCTTTATCCCTGGGCCAGGACCCATCCAATGACTGCAACG
ACAACCAGCGGGAAGTTCGCATAGTGGCCCAGCGGCGGGGGCAGAATGAGCCCGTGCTGGGGGTAGATTA
CCGGCAGCGCAAGATCACCATCCAGAACCGAGCAGATCTCGTGATAAATGAAGTGATGTGGTGGGACCAT
GGAGTGTATTACTGCACCATTGAGGCTCCAGGGGACACATCAGGAGACCCCGATAAGGAAGTAAAGCTCA
TCGTCCTACACTGGCTGACAGTGATCTTCATCATCCTGGGAGCCCTCCTCCTCCTGCTGCTGATTGGAGT
GTGCTGGTGCCAGTGCTGTCCTCAGTATTGCTGCTGCTATATCCGCTGTCCCTGCTGTCCTGCCCACTGC
TGCTGTCCTGAGGAAGCCCTGGCCCGCCACCGCTACATGAAGCAGGCCCAGGCCCTAGGTCCTCAGATGA
TGGGAAAACCCCTGTACTGGGGGGCGGACAGGAGCTCCCAGGTTTCATCTTATCCAATGCACCCGCTGCT
GCAGCGAGATTTGTCCCTGCCGTCCAGCCTCCCGCAGATGCCAATGACCCAGACCACCAATCAGCCTCCC
ATCGCCAATGGTGTCCTGGAGTATTTGGAGAAAGAACTGCGGAACCTCAACCTGGCCCAGCCTCTGCCCC
CTGACCTCAAAGGCAGATTTGGCCATCCCTGCAGCATGCTGTCCTCCCTGGGCTCTGAGGTCGTGGAACG
CAGAATCATCCACCTGCCCCCACTGATCAGAGACCTGTCATCCTCAAGGAGGACCAGTGACTCCCTGCAC
CAGCAGTGGCTCACCCCAATTCCCTCCAGGCCCTGGGATCTGAGGGAGGGGAGAAGCCACCACCATTACC
CTGATTTCCACCAGGAGCTCCAGGACCGGGGGCCAAAGTCTTGGGCATTGGAAAGAAGGGAGTTGGACCC
ATCGTGGAGTGGAAGGCACCGTAGCTCTAGGCTGAATGGGTCACCCATACACTGGTCAGACAGGGACAGC
CTAAGCGATGTCCCCTCATCCAGTGAGGCACGCTGGCGGCCGAGCCACCCTCCTTTCAGGAGCCGCTGTC
AGGAGAGGCCCCGCAGGCCCAGCCCCCGGGAGAGCACTCAGAGGCACGGGAGACGACGCAGGCACCGCAG
CTACTCTCCTCCCTTGCCCTCCGGCCTCAGTTCCTGGAGCTCTGAAGAGGACAAGGAGAGGCAGCCCCAG
AGCTGGCGGGCCCACCGCCGCGGCTCGCACTCCCCACACTGGCCCGAGGAGAAGCCGCCTAGCTACCGCT
CACTTGATATCACTCCAGGCAAGAATAGCAGGAAAAAAGGGAGTGTGGAGAGGCGCTCGGAGAAAGACAG
CTCTCATAGTGGAAGGAGTGTGGTCATTTAG

Translation (546 aa):
MAWPKLPAPWLLLCTWLPAGCLSLLVTVQHTERYVTLFASIILKCDYTTSAQLQDVVVTWRFKSFCKDPI
FDYYSASYQAALSLGQDPSNDCNDNQREVRIVAQRRGQNEPVLGVDYRQRKITIQNRADLVINEVMWWDH
GVYYCTIEAPGDTSGDPDKEVKLIVLHWLTVIFIILGALLLLLLIGVCWCQCCPQYCCCYIRCPCCPAHC
CCPEEALARHRYMKQAQALGPQMMGKPLYWGADRSSQVSSYPMHPLLQRDLSLPSSLPQMPMTQTTNQPP
IANGVLEYLEKELRNLNLAQPLPPDLKGRFGHPCSMLSSLGSEVVERRIIHLPPLIRDLSSSRRTSDSLH
QQWLTPIPSRPWDLREGRSHHHYPDFHQELQDRGPKSWALERRELDPSWSGRHRSSRLNGSPIHWSDRDS
LSDVPSSSEARWRPSHPPFRSRCQERPRRPSPRESTQRHGRRRRHRSYSPPLPSGLSSWSSEEDKERQPQ
SWRAHRRGSHSPHWPEEKPPSYRSLDITPGKNSRKKGSVERRSEKDSSHSGRSVVI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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