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Report for CCDS5626.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5626.1 Public Homo sapiens 7 ERVW-1 24 110 108 CCDS HistoryNCBI Gene:30816Re-query CCDS DB by CCDS ID:5626.1Re-query CCDS DB by GeneID:30816See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
Endogenous retrovirus

Sequence IDs included in CCDS 5626.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000493463.2 ENSP00000419945.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000493463.2Link to Ensembl Protein Viewer:ENSP00000419945.1Re-query CCDS DB by Nucleotide ID:ENST00000493463Re-query CCDS DB by Protein ID:ENSP00000419945
Original member Current member EBI ENST00000603053.2 ENSP00000474984.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000603053.2Link to Ensembl Protein Viewer:ENSP00000474984.1Re-query CCDS DB by Nucleotide ID:ENST00000603053Re-query CCDS DB by Protein ID:ENSP00000474984
Original member Current member NCBI NM_001130925.2 NP_001124397.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001130925.2Link to Protein Sequence:NP_001124397.1Re-query CCDS DB by Nucleotide ID:NM_001130925Re-query CCDS DB by Protein ID:NP_001124397Link to BLAST:NP_001124397.1
Original member Current member NCBI NM_014590.4 NP_055405.3 Accepted alive Link to Nucleotide Sequence:NM_014590.4Link to Protein Sequence:NP_055405.3Re-query CCDS DB by Nucleotide ID:NM_014590Re-query CCDS DB by Protein ID:NP_055405Link to BLAST:NP_055405.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001124397.1 538 Q9UQF0 538 100% 0 0
NP_055405.3 538 Q9UQF0 538 100% 0 0

Chromosomal Locations for CCDS 5626.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 92468765 92470381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1617 nt):
ATGGCCCTCCCTTATCATATTTTTCTCTTTACTGTTCTTTTACCCTCTTTCACTCTCACTGCACCCCCTC
CATGCCGCTGTATGACCAGTAGCTCCCCTTACCAAGAGTTTCTATGGAGAATGCAGCGTCCCGGAAATAT
TGATGCCCCATCGTATAGGAGTCTTTCTAAGGGAACCCCCACCTTCACTGCCCACACCCATATGCCCCGC
AACTGCTATCACTCTGCCACTCTTTGCATGCATGCAAATACTCATTATTGGACAGGAAAAATGATTAATC
CTAGTTGTCCTGGAGGACTTGGAGTCACTGTCTGTTGGACTTACTTCACCCAAACTGGTATGTCTGATGG
GGGTGGAGTTCAAGATCAGGCAAGAGAAAAACATGTAAAAGAAGTAATCTCCCAACTCACCCGGGTACAT
GGCACCTCTAGCCCCTACAAAGGACTAGATCTCTCAAAACTACATGAAACCCTCCGTACCCATACTCGCC
TGGTAAGCCTATTTAATACCACCCTCACTGGGCTCCATGAGGTCTCGGCCCAAAACCCTACTAACTGTTG
GATATGCCTCCCCCTGAACTTCAGGCCATATGTTTCAATCCCTGTACCTGAACAATGGAACAACTTCAGC
ACAGAAATAAACACCACTTCCGTTTTAGTAGGACCTCTTGTTTCCAATCTGGAAATAACCCATACCTCAA
ACCTCACCTGTGTAAAATTTAGCAATACTACATACACAACCAACTCCCAATGCATCAGGTGGGTAACTCC
TCCCACACAAATAGTCTGCCTACCCTCAGGAATATTTTTTGTCTGTGGTACCTCAGCCTATCGTTGTTTG
AATGGCTCTTCAGAATCTATGTGCTTCCTCTCATTCTTAGTGCCCCCTATGACCATCTACACTGAACAAG
ATTTATACAGTTATGTCATATCTAAGCCCCGCAACAAAAGAGTACCCATTCTTCCTTTTGTTATAGGAGC
AGGAGTGCTAGGTGCACTAGGTACTGGCATTGGCGGTATCACAACCTCTACTCAGTTCTACTACAAACTA
TCTCAAGAACTAAATGGGGACATGGAACGGGTCGCCGACTCCCTGGTCACCTTGCAAGATCAACTTAACT
CCCTAGCAGCAGTAGTCCTTCAAAATCGAAGAGCTTTAGACTTGCTAACCGCTGAAAGAGGGGGAACCTG
TTTATTTTTAGGGGAAGAATGCTGTTATTATGTTAATCAATCCGGAATCGTCACTGAGAAAGTTAAAGAA
ATTCGAGATCGAATACAACGTAGAGCAGAGGAGCTTCGAAACACTGGACCCTGGGGCCTCCTCAGCCAAT
GGATGCCCTGGATTCTCCCCTTCTTAGGACCTCTAGCAGCTATAATATTGCTACTCCTCTTTGGACCCTG
TATCTTTAACCTCCTTGTTAACTTTGTCTCTTCCAGAATCGAAGCTGTAAAACTACAAATGGAGCCCAAG
ATGCAGTCCAAGACTAAGATCTACCGCAGACCCCTGGACCGGCCTGCTAGCCCACGATCTGATGTTAATG
ACATCAAAGGCACCCCTCCTGAGGAAATCTCAGCTGCACAACCTCTACTACGCCCCAATTCAGCAGGAAG
CAGTTAG

Translation (538 aa):
MALPYHIFLFTVLLPSFTLTAPPPCRCMTSSSPYQEFLWRMQRPGNIDAPSYRSLSKGTPTFTAHTHMPR
NCYHSATLCMHANTHYWTGKMINPSCPGGLGVTVCWTYFTQTGMSDGGGVQDQAREKHVKEVISQLTRVH
GTSSPYKGLDLSKLHETLRTHTRLVSLFNTTLTGLHEVSAQNPTNCWICLPLNFRPYVSIPVPEQWNNFS
TEINTTSVLVGPLVSNLEITHTSNLTCVKFSNTTYTTNSQCIRWVTPPTQIVCLPSGIFFVCGTSAYRCL
NGSSESMCFLSFLVPPMTIYTEQDLYSYVISKPRNKRVPILPFVIGAGVLGALGTGIGGITTSTQFYYKL
SQELNGDMERVADSLVTLQDQLNSLAAVVLQNRRALDLLTAERGGTCLFLGEECCYYVNQSGIVTEKVKE
IRDRIQRRAEELRNTGPWGLLSQWMPWILPFLGPLAAIILLLLFGPCIFNLLVNFVSSRIEAVKLQMEPK
MQSKTKIYRRPLDRPASPRSDVNDIKGTPPEEISAAQPLLRPNSAGSS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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