NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS56218.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56218.1 Public Homo sapiens 21 SLC19A1 24 110 108 CCDS HistoryNCBI Gene:6573Re-query CCDS DB by CCDS ID:56218.1Re-query CCDS DB by GeneID:6573See the combined annotation on chromosome 21 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56218.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000380010.8 ENSP00000369347.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000380010.8Link to Ensembl Protein Viewer:ENSP00000369347.4Re-query CCDS DB by Nucleotide ID:ENST00000380010Re-query CCDS DB by Protein ID:ENSP00000369347
Original member Current member EBI ENST00000650808.1 ENSP00000498221.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000650808.1Link to Ensembl Protein Viewer:ENSP00000498221.1Re-query CCDS DB by Nucleotide ID:ENST00000650808Re-query CCDS DB by Protein ID:ENSP00000498221
Original member Current member NCBI NM_001205206.4 NP_001192135.1 Accepted alive Link to Nucleotide Sequence:NM_001205206.4Link to Protein Sequence:NP_001192135.1Re-query CCDS DB by Nucleotide ID:NM_001205206Re-query CCDS DB by Protein ID:NP_001192135Link to BLAST:NP_001192135.1
Original member Current member NCBI NM_001352511.3 NP_001339440.1 Accepted alive Link to Nucleotide Sequence:NM_001352511.3Link to Protein Sequence:NP_001339440.1Re-query CCDS DB by Nucleotide ID:NM_001352511Re-query CCDS DB by Protein ID:NP_001339440Link to BLAST:NP_001339440.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001192135.1 489 P41440-3 489 100% 0 0
NP_001339440.1 489 P41440-3 489 100% 0 0

Chromosomal Locations for CCDS 56218.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 21 (NC_000021.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21See the combined annotation on chromosome 21 in Sequence Viewer

Chromosome Start Stop Links
21 45514976 45515152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 45525817 45525958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 45530770 45530971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 45531389 45532148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 45537771 45537959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1470 nt):
ATGGTGCCCTCCAGCCCAGCGGTGGAGAAGCAGGTGCCCGTGGAACCTGGGCCTGACCCCGAGCTCCGGT
CCTGGCGGCACCTCGTGTGCTACCTTTGCTTCTACGGCTTCATGGCGCAGATACGGCCAGGGGAGAGCTT
CATCACCCCCTACCTCCTGGGGCCCGACAAGAACTTCACGCGGGAGCAGGTCACGAACGAGATCACGCCG
GTGCTGTCGTACTCCTACCTGGCCGTGCTGGTGCCCGTGTTCCTGCTCACCGACTACCTGCGCTACACGC
CGGTGCTGCTGCTGCAGGGGCTCAGCTTCGTGTCGGTGTGGCTGCTGCTGCTGCTGGGCCACTCGGTGGC
GCACATGCAGCTCATGGAGCTCTTCTACAGCGTCACCATGGCCGCGCGCATCGCCTATTCCTCCTACATC
TTCTCTCTCGTGCGGCCCGCGCGCTACCAGCGTGTGGCCGGCTACTCGCGCGCTGCGGTGCTGCTGGGCG
TGTTCACCAGCTCCGTGCTGGGCCAGCTGCTGGTCACTGTGGGCCGAGTCTCCTTCTCCACGCTCAACTA
CATCTCGCTGGCCTTCCTCACCTTCAGCGTGGTCCTCGCCCTCTTCCTGAAGCGCCCCAAGCGCAGCCTC
TTCTTCAACCGCGACGACCGGGGGCGGTGCGAAACCTCGGCTTCGGAGCTGGAGCGCATGAATCCTGGCC
CAGGCGGGAAGCTGGGACACGCCCTGCGGGTGGCCTGTGGGGACTCAGTGCTGGCGCGGATGCTGCGGGA
GCTGGGGGACAGCCTGCGGCGGCCGCAGCTGCGCCTGTGGTCCCTCTGGTGGGTCTTCAACTCGGCCGGC
TACTACCTGGTGGTCTACTACGTGCACATCCTGTGGAACGAGGTGGACCCCACCACCAACAGTGCGCGGG
TCTACAACGGCGCGGCAGATGCTGCCTCCACGCTGCTGGGCGCCATCACGTCCTTCGCCGCGGGCTTCGT
GAAGATCCGCTGGGCGCGCTGGTCCAAGCTGCTCATCGCGGGCGTCACGGCCACGCAGGCGGGGCTGGTC
TTCCTTCTGGCGCACACGCGCCACCCGAGCAGCATCTGGCTGTGCTATGCGGCCTTCGTGCTGTTCCGCG
GCTCCTACCAGTTCCTCGTGCCCATCGCCACCTTTCAGATTGCATCTTCTCTGTCTAAAGAGCTCTGTGC
CCTGGTCTTCGGGGTCAACACGTTCTTTGCCACCATCGTCAAGACCATCATCACTTTCATTGTCTCGGAC
GTGCGGGGCCTGGGCCTCCCGGTCCGCAAGCAGAATGAAGAACTGCATGTGGCTTCTCTGTCTCTGTGGA
AAAGCCATCTCAGGTTGGCGGCAGACACATTGTCATCAGAGGGGAGCAGCGGCTCTGGTCCTCGGAGCTG
GTTCCTCTCTCCCACCCTAAGGGCAGCCCTCCATGGTCCTGTCTGTCCTTCTGAAGTGTGTCCATCCTGA

Translation (489 aa):
MVPSSPAVEKQVPVEPGPDPELRSWRHLVCYLCFYGFMAQIRPGESFITPYLLGPDKNFTREQVTNEITP
VLSYSYLAVLVPVFLLTDYLRYTPVLLLQGLSFVSVWLLLLLGHSVAHMQLMELFYSVTMAARIAYSSYI
FSLVRPARYQRVAGYSRAAVLLGVFTSSVLGQLLVTVGRVSFSTLNYISLAFLTFSVVLALFLKRPKRSL
FFNRDDRGRCETSASELERMNPGPGGKLGHALRVACGDSVLARMLRELGDSLRRPQLRLWSLWWVFNSAG
YYLVVYYVHILWNEVDPTTNSARVYNGAADAASTLLGAITSFAAGFVKIRWARWSKLLIAGVTATQAGLV
FLLAHTRHPSSIWLCYAAFVLFRGSYQFLVPIATFQIASSLSKELCALVFGVNTFFATIVKTIITFIVSD
VRGLGLPVRKQNEELHVASLSLWKSHLRLAADTLSSEGSSGSGPRSWFLSPTLRAALHGPVCPSEVCPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH