NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS56058.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56058.1 Public Homo sapiens 18 NOL4 24 110 108 CCDS HistoryNCBI Gene:8715Re-query CCDS DB by CCDS ID:56058.1Re-query CCDS DB by GeneID:8715See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56058.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000535384.5 ENSP00000445733.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000535384.5Link to Ensembl Protein Viewer:ENSP00000445733.1Re-query CCDS DB by Nucleotide ID:ENST00000535384Re-query CCDS DB by Protein ID:ENSP00000445733
Original member Current member NCBI NM_001198549.2 NP_001185478.1 Accepted alive Link to Nucleotide Sequence:NM_001198549.2Link to Protein Sequence:NP_001185478.1Re-query CCDS DB by Nucleotide ID:NM_001198549Re-query CCDS DB by Protein ID:NP_001185478Link to BLAST:NP_001185478.1
Original member Current member NCBI NM_001384472.1 NP_001371401.1 Accepted alive Link to Nucleotide Sequence:NM_001384472.1Link to Protein Sequence:NP_001371401.1Re-query CCDS DB by Nucleotide ID:NM_001384472Re-query CCDS DB by Protein ID:NP_001371401Link to BLAST:NP_001371401.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001185478.1 353 O94818-4 353 100% 0 0
NP_001371401.1 353 O94818-4 353 100% 0 0

Chromosomal Locations for CCDS 56058.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 33852842 33853035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 33883244 33883424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 33943065 33943178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 33957326 33957517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 33958239 33958418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 34019318 34019518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1062 nt):
ATGGGAGACTCCAACAGTGATGGCAAAACTGGGCTGGAGCAAGATGAACAGCCACTGAACCTGAGTGACA
GTCCCCTCTCTGCGCAGCTAACTTCGGAATACAGAATAGATGATCACAACAGTAATGGGAAAAACAAGTA
TAAGAATCTTCTAATTTCTGACCTCAAGATGGAACGAGAGGCGAGAGAAAATGGAAGCAAGTCTCCTGCA
CATAGTTACTCCAGCTATGACTCTGGCAAAAATGAGAGTGTAGACCGAGGAGCTGAGGACCTCTCACTAA
ACAGGGGAGATGAGGACGAAGATGACCACGAGGACCATGACGATTCGGAGAAAGTTAATGAGACAGACGG
CGTTGAAGCCGAGCGGCTGAAAGCTTTTAATATGTTTGTCAGGCTGTTTGTAGATGAAAACTTGGACCGA
ATGGTCCCAATCTCTAAGCAGCCCAAAGAAAAGATCCAGGCTATCATTGACTCATGCAGGCGACAATTCC
CTGAGTATCAAGAGCGTGCCAGAAAACGTATACGTACTTACCTCAAGTCCTGCAGGCGGATGAAAAGAAG
TGGTTTTGAGATGTCTCGACCTATTCCTTCCCACCTTACTTCAGCAGTTGCAGAGAGTATCTTGGCTTCA
GCTTGTGAGAGTGAGAGTAGAAATGCCGCCAAGAGGATGCGTCTGGAGAGACAGCAGGATGAGTCTGCTC
CAGCTGACAAACAGTGTAAACCAGAGGCGACCCAGGCCACTTACTCAACATCAGCTGTTCCAGGCTCACA
GGACGTGCTGTACATCAATGGAAATGGGACCTATAGTTACCATAGTTACAGAGGGCTAGGAGGGGGTCTG
CTAAATCTGAATGATGCTTCCAGCAGTGGACCCACTGATCTCAGCATGAAGAGACAATTGGCGACTAGCT
CAGGATCCTCCAGCAGCTCAAACTCCAGACCCCAGCTGAGTCCAACTGAAATCAATGCCGTGAGACAGCT
TGTTGCAGGATATCGAGAATCAGCTGCATTTTTATTGCGATCTGCAGATGAACTGGAAAATCTCATTTTA
CAACAGAACTGA

Translation (353 aa):
MGDSNSDGKTGLEQDEQPLNLSDSPLSAQLTSEYRIDDHNSNGKNKYKNLLISDLKMEREARENGSKSPA
HSYSSYDSGKNESVDRGAEDLSLNRGDEDEDDHEDHDDSEKVNETDGVEAERLKAFNMFVRLFVDENLDR
MVPISKQPKEKIQAIIDSCRRQFPEYQERARKRIRTYLKSCRRMKRSGFEMSRPIPSHLTSAVAESILAS
ACESESRNAAKRMRLERQQDESAPADKQCKPEATQATYSTSAVPGSQDVLYINGNGTYSYHSYRGLGGGL
LNLNDASSSGPTDLSMKRQLATSSGSSSSSNSRPQLSPTEINAVRQLVAGYRESAAFLLRSADELENLIL
QQN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH