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Report for CCDS55756.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55756.1 Public Homo sapiens 11 SLC1A2 24 110 108 CCDS HistoryNCBI Gene:6506Re-query CCDS DB by CCDS ID:55756.1Re-query CCDS DB by GeneID:6506See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55756.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000395753.6 ENSP00000379102.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000395753.6Link to Ensembl Protein Viewer:ENSP00000379102.1Re-query CCDS DB by Nucleotide ID:ENST00000395753Re-query CCDS DB by Protein ID:ENSP00000379102
Original member Current member EBI ENST00000645634.1 ENSP00000493945.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000645634.1Link to Ensembl Protein Viewer:ENSP00000493945.1Re-query CCDS DB by Nucleotide ID:ENST00000645634Re-query CCDS DB by Protein ID:ENSP00000493945
Original member Current member EBI ENST00000647104.1 ENSP00000494025.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000647104.1Link to Ensembl Protein Viewer:ENSP00000494025.1Re-query CCDS DB by Nucleotide ID:ENST00000647104Re-query CCDS DB by Protein ID:ENSP00000494025
Original member Current member EBI ENST00000644299.1 ENSP00000494669.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000644299.1Link to Ensembl Protein Viewer:ENSP00000494669.1Re-query CCDS DB by Nucleotide ID:ENST00000644299Re-query CCDS DB by Protein ID:ENSP00000494669
Original member Current member EBI ENST00000643000.1 ENSP00000495164.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000643000.1Link to Ensembl Protein Viewer:ENSP00000495164.1Re-query CCDS DB by Nucleotide ID:ENST00000643000Re-query CCDS DB by Protein ID:ENSP00000495164
Original member Current member EBI ENST00000645194.1 ENSP00000496093.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000645194.1Link to Ensembl Protein Viewer:ENSP00000496093.1Re-query CCDS DB by Nucleotide ID:ENST00000645194Re-query CCDS DB by Protein ID:ENSP00000496093
Original member Current member EBI ENST00000644050.1 ENSP00000496123.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000644050.1Link to Ensembl Protein Viewer:ENSP00000496123.1Re-query CCDS DB by Nucleotide ID:ENST00000644050Re-query CCDS DB by Protein ID:ENSP00000496123
Original member Current member NCBI NM_001195728.3 NP_001182657.1 Accepted alive Link to Nucleotide Sequence:NM_001195728.3Link to Protein Sequence:NP_001182657.1Re-query CCDS DB by Nucleotide ID:NM_001195728Re-query CCDS DB by Protein ID:NP_001182657Link to BLAST:NP_001182657.1
Original member Current member NCBI NM_001252652.2 NP_001239581.1 Accepted alive Link to Nucleotide Sequence:NM_001252652.2Link to Protein Sequence:NP_001239581.1Re-query CCDS DB by Nucleotide ID:NM_001252652Re-query CCDS DB by Protein ID:NP_001239581Link to BLAST:NP_001239581.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001182657.1 565 P43004-2 565 100% 0 0
NP_001239581.1 565 P43004-2 565 100% 0 0

Chromosomal Locations for CCDS 55756.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 35260894 35260965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 35265527 35265758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 35280867 35281001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 35286757 35286951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 35292287 35292520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 35301519 35301645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 35306074 35306242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 35312198 35312448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 35315023 35315175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 35317377 35317506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1698 nt):
ATGCCCAAGCAGGTGGAAGTGCGAATGCACGACAGTCATCTTGGCTCAGAGGAACCCAAGCACCGGCACC
TGGGCCTGCGCCTGTGTGACAAGCTGGGGAAGAATCTGCTGCTCACCCTGACGGTGTTTGGTGTCATCCT
GGGAGCAGTGTGTGGAGGGCTTCTTCGCTTGGCATCTCCCATCCACCCTGATGTGGTTATGTTAATAGCC
TTCCCAGGGGATATACTCATGAGGATGCTAAAAATGCTCATTCTCCCTCTAATCATCTCCAGCTTAATCA
CAGGGTTGTCAGGCCTGGATGCTAAGGCTAGTGGCCGCTTGGGCACGAGAGCCATGGTGTATTACATGTC
CACGACCATCATTGCTGCAGTACTGGGGGTCATTCTGGTCTTGGCTATCCATCCAGGCAATCCCAAGCTC
AAGAAGCAGCTGGGGCCTGGGAAGAAGAATGATGAAGTGTCCAGCCTGGATGCCTTCCTGGACCTTATTC
GAAATCTCTTCCCTGAAAACCTTGTCCAAGCCTGCTTTCAACAGATTCAAACAGTGACGAAGAAAGTCCT
GGTTGCACCACCGCCGGACGAGGAGGCCAACGCAACCAGCGCTGTTGTCTCTCTGTTGAACGAGACTGTG
ACTGAGGTGCCGGAGGAGACTAAGATGGTTATCAAGAAGGGCCTGGAGTTCAAGGATGGGATGAACGTCT
TAGGTCTGATAGGGTTTTTCATTGCTTTTGGCATCGCTATGGGGAAGATGGGAGATCAGGCCAAGCTGAT
GGTGGATTTCTTCAACATTTTGAATGAGATTGTAATGAAGTTAGTGATCATGATCATGTGGTACTCTCCC
CTGGGTATCGCCTGCCTGATCTGTGGAAAGATCATTGCAATCAAGGACTTAGAAGTGGTTGCTAGGCAAC
TGGGGATGTACATGGTAACAGTGATCATAGGCCTCATCATCCACGGGGGCATCTTTCTCCCCTTGATTTA
CTTTGTAGTGACCAGGAAAAACCCCTTCTCCTTTTTTGCTGGCATTTTCCAAGCTTGGATCACTGCCCTG
GGCACCGCTTCCAGTGCTGGAACTTTGCCTGTCACCTTTCGTTGCCTGGAAGAAAATCTGGGGATTGATA
AGCGTGTGACTAGATTCGTCCTTCCTGTTGGAGCAACCATTAACATGGATGGTACAGCCCTTTATGAAGC
GGTAGCCGCCATCTTTATAGCCCAAATGAATGGTGTTGTCCTGGATGGAGGACAGATTGTGACTGTAAGC
CTCACAGCCACCCTGGCAAGCGTCGGCGCGGCCAGTATCCCCAGTGCCGGGCTGGTCACCATGCTCCTCA
TTCTGACAGCCGTGGGCCTGCCAACAGAGGACATCAGCCTGCTGGTGGCTGTGGACTGGCTGCTGGACAG
GATGAGAACTTCAGTCAATGTTGTGGGTGACTCTTTTGGGGCTGGGATAGTCTATCACCTCTCCAAGTCT
GAGCTGGATACCATTGACTCCCAGCATCGAGTGCATGAAGATATTGAAATGACCAAGACTCAATCCATTT
ATGATGACATGAAGAACCACAGGGAAAGCAACTCTAATCAATGTGTCTATGCTGCACACAACTCTGTCAT
AGTAGATGAATGCAAGGTAACTCTGGCAGCCAATGGAAAGTCAGCCGACTGCAGTGTTGAGGAAGAACCT
TGGAAACGTGAGAAATAA

Translation (565 aa):
MPKQVEVRMHDSHLGSEEPKHRHLGLRLCDKLGKNLLLTLTVFGVILGAVCGGLLRLASPIHPDVVMLIA
FPGDILMRMLKMLILPLIISSLITGLSGLDAKASGRLGTRAMVYYMSTTIIAAVLGVILVLAIHPGNPKL
KKQLGPGKKNDEVSSLDAFLDLIRNLFPENLVQACFQQIQTVTKKVLVAPPPDEEANATSAVVSLLNETV
TEVPEETKMVIKKGLEFKDGMNVLGLIGFFIAFGIAMGKMGDQAKLMVDFFNILNEIVMKLVIMIMWYSP
LGIACLICGKIIAIKDLEVVARQLGMYMVTVIIGLIIHGGIFLPLIYFVVTRKNPFSFFAGIFQAWITAL
GTASSAGTLPVTFRCLEENLGIDKRVTRFVLPVGATINMDGTALYEAVAAIFIAQMNGVVLDGGQIVTVS
LTATLASVGAASIPSAGLVTMLLILTAVGLPTEDISLLVAVDWLLDRMRTSVNVVGDSFGAGIVYHLSKS
ELDTIDSQHRVHEDIEMTKTQSIYDDMKNHRESNSNQCVYAAHNSVIVDECKVTLAANGKSADCSVEEEP
WKREK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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