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Report for CCDS55738.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55738.1 Public Homo sapiens 11 TRIM6 24 110 108 CCDS HistoryNCBI Gene:117854Re-query CCDS DB by CCDS ID:55738.1Re-query CCDS DB by GeneID:117854See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55738.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000445329.5 ENSP00000399215.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000445329.5Link to Ensembl Protein Viewer:ENSP00000399215.1Re-query CCDS DB by Nucleotide ID:ENST00000445329Re-query CCDS DB by Protein ID:ENSP00000399215
Original member Current member EBI ENST00000506134.5 ENSP00000421079.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000506134.5Link to Ensembl Protein Viewer:ENSP00000421079.1Re-query CCDS DB by Nucleotide ID:ENST00000506134Re-query CCDS DB by Protein ID:ENSP00000421079
Original member Current member EBI ENST00000515022.5 ENSP00000421802.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000515022.5Link to Ensembl Protein Viewer:ENSP00000421802.1Re-query CCDS DB by Nucleotide ID:ENST00000515022Re-query CCDS DB by Protein ID:ENSP00000421802
Original member Current member EBI ENST00000507320.5 ENSP00000427704.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000507320.5Link to Ensembl Protein Viewer:ENSP00000427704.1Re-query CCDS DB by Nucleotide ID:ENST00000507320Re-query CCDS DB by Protein ID:ENSP00000427704
Original member Current member NCBI NM_001198644.2 NP_001185573.1 Accepted alive Link to Nucleotide Sequence:NM_001198644.2Link to Protein Sequence:NP_001185573.1Re-query CCDS DB by Nucleotide ID:NM_001198644Re-query CCDS DB by Protein ID:NP_001185573Link to BLAST:NP_001185573.1
Original member Current member NCBI NM_001198645.2 NP_001185574.1 Accepted alive Link to Nucleotide Sequence:NM_001198645.2Link to Protein Sequence:NP_001185574.1Re-query CCDS DB by Nucleotide ID:NM_001198645Re-query CCDS DB by Protein ID:NP_001185574Link to BLAST:NP_001185574.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001185573.1 313 Q9C030-3 313 100% 0 0
NP_001185574.1 313 Q9C030-3 313 100% 0 0

Chromosomal Locations for CCDS 55738.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 5605343 5605567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5608372 5608394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5610145 5610245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5610535 5610561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5610777 5611342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (942 nt):
ATGGAGCCTGAGAGATGCAGGATCCAGACAGAGTTTAATCAGCTGCGAAATATCCTAGACAGAGTGGAGC
AACGGGAGCTGAAAAAGCTGGAACAGGAAGAGAAGAAGGGGCTACGAATTATAGAAGAGGCTGAGAATGA
TCTGGTCCACCAGACCCAGTCGCTGCGAGAGCTCATCTCGGATCTGGAGCGTCGATGTCAGGGGTCAACA
ATGGAGCTGCTGCAGGATGTGAGTGATGTCACAGAAAGGAGTGAGTTCTGGACCCTGAGGAAGCCAGAAG
CTCTCCCTACAAAGCTGAGAAGTATGTTCCGAGCCCCAGATCTGAAAAGGATGCTGCGAGTGTGTAGAGA
GCTGACAGATGTCCAAAGCTACTGGGTTGACGTGACCCTGAATCCACACACAGCTAATTTAAATCTTGTC
CTGGCTAAAAACCGGAGACAAGTGAGGTTTGTGGGAGCTAAAGTATCTGGACCTTCCTGTCTGGAAAAGC
ATTATGACTGTAGTGTCCTGGGCTCCCAGCACTTCTCCTCTGGTAAGCATTACTGGGAGGTAGATGTGGC
CAAGAAGACTGCCTGGATCCTGGGGGTATGCAGCAATTCACTGGGACCTACATTCTCTTTCAACCATTTT
GCTCAAAATCACAGTGCTTACTCCAGGTATCAGCCTCAGAGTGGATACTGGGTGATTGGGTTACAGCATA
ACCATGAATATAGGGCCTATGAGGATTCTTCCCCTTCCCTGCTTCTCTCCATGACAGTGCCCCCTCGCCG
TGTTGGGGTTTTCTTAGATTATGAGGCTGGTACTGTCTCCTTTTATAATGTCACAAACCATGGCTTCCCC
ATCTACACTTTCTCTAAATATTACTTTCCCACTACTCTTTGTCCATATTTTAATCCTTGCAACTGTGTAA
TTCCTATGACCCTGCGTCGTCCAAGCTCTTGA

Translation (313 aa):
MEPERCRIQTEFNQLRNILDRVEQRELKKLEQEEKKGLRIIEEAENDLVHQTQSLRELISDLERRCQGST
MELLQDVSDVTERSEFWTLRKPEALPTKLRSMFRAPDLKRMLRVCRELTDVQSYWVDVTLNPHTANLNLV
LAKNRRQVRFVGAKVSGPSCLEKHYDCSVLGSQHFSSGKHYWEVDVAKKTAWILGVCSNSLGPTFSFNHF
AQNHSAYSRYQPQSGYWVIGLQHNHEYRAYEDSSPSLLLSMTVPPRRVGVFLDYEAGTVSFYNVTNHGFP
IYTFSKYYFPTTLCPYFNPCNCVIPMTLRRPSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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