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Report for CCDS55367.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55367.1 Public Homo sapiens X PUDP 24 110 108 CCDS HistoryNCBI Gene:8226Re-query CCDS DB by CCDS ID:55367.1Re-query CCDS DB by GeneID:8226See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55367.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000412827.6 ENSP00000406260.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000412827.6Link to Ensembl Protein Viewer:ENSP00000406260.2Re-query CCDS DB by Nucleotide ID:ENST00000412827Re-query CCDS DB by Protein ID:ENSP00000406260
Original member Current member NCBI NM_001178136.2 NP_001171607.1 Accepted alive Link to Nucleotide Sequence:NM_001178136.2Link to Protein Sequence:NP_001171607.1Re-query CCDS DB by Nucleotide ID:NM_001178136Re-query CCDS DB by Protein ID:NP_001171607Link to BLAST:NP_001171607.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171607.1 185 Q08623-2 185 100% 0 0

Chromosomal Locations for CCDS 55367.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 7050296 7050472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7077220 7077449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7105749 7105838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7148053 7148113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (558 nt):
ATGGCGGCGCCCCCGCAGCCCGTCACCCACCTCATCTTTGACATGGACGGACTTCTTCTGGATACTGAAC
GGCTGTATTCAGTGGTGTTTCAAGAAATATGTAATCGCTATGACAAGAAATACAGCTGGGATGTAAAGTC
CCTGGTTATGGGGGCGGAGAAACTCATCATCCACCTGCGGAAACATGGCATCCCCTTTGCACTGGCCACC
AGCTCGGGGTCCGCGTCGTTCGATATGAAGACAAGCCGCCACAAGGAGTTCTTCAGCTTGTTTTCCCACA
TTGTGCTGGGAGATGACCCCGAAGTGCAGCATGGCAAGCCAGACCCGGACATCTTCCTAGCTTGTGCCAA
GAGGTTCTCTCCCCCTCCTGCTATGGAGAAGTGCCTTGTCTTTGAAGATGCTCCCAATGGGGTGGAGGCG
GCCCTGGCAGCTGGGATGCAGGTGGTCATGGTTCCTGACGGAAACTTGAGCCGAGATCTGACAACAAAGG
CCACCCTGGTGCTGAATTCCCTGCAGGACTTCCAGCCCGAGCTGTTTGGTTTGCCCTCCTATGAGTGA

Translation (185 aa):
MAAPPQPVTHLIFDMDGLLLDTERLYSVVFQEICNRYDKKYSWDVKSLVMGAEKLIIHLRKHGIPFALAT
SSGSASFDMKTSRHKEFFSLFSHIVLGDDPEVQHGKPDPDIFLACAKRFSPPPAMEKCLVFEDAPNGVEA
ALAAGMQVVMVPDGNLSRDLTTKATLVLNSLQDFQPELFGLPSYE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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