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Report for CCDS5533.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5533.1 Public Homo sapiens 7 TPST1 24 110 108 CCDS HistoryNCBI Gene:8460Re-query CCDS DB by CCDS ID:5533.1Re-query CCDS DB by GeneID:8460See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5533.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000304842.6 ENSP00000302413.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000304842.6Link to Ensembl Protein Viewer:ENSP00000302413.5Re-query CCDS DB by Nucleotide ID:ENST00000304842Re-query CCDS DB by Protein ID:ENSP00000302413
Original member Current member EBI ENST00000649664.1 ENSP00000497281.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000649664.1Link to Ensembl Protein Viewer:ENSP00000497281.1Re-query CCDS DB by Nucleotide ID:ENST00000649664Re-query CCDS DB by Protein ID:ENSP00000497281
Original member Current member NCBI NM_003596.4 NP_003587.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003596.4Link to Protein Sequence:NP_003587.1Re-query CCDS DB by Nucleotide ID:NM_003596Re-query CCDS DB by Protein ID:NP_003587Link to BLAST:NP_003587.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003587.1 370 O60507 370 100% 0 0

Chromosomal Locations for CCDS 5533.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 66240426 66241270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 66286511 66286709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 66352505 66352555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 66356825 66356842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1113 nt):
ATGGTTGGAAAGCTGAAGCAGAACTTACTATTGGCATGTCTGGTGATTAGTTCTGTGACTGTGTTTTACC
TGGGCCAGCATGCCATGGAATGCCATCACCGGATAGAGGAACGTAGCCAGCCAGTCAAATTGGAGAGCAC
AAGGACCACTGTGAGAACTGGCCTGGACCTCAAAGCCAACAAAACCTTTGCCTATCACAAAGATATGCCT
TTAATATTTATTGGAGGTGTGCCTCGGAGTGGAACCACACTCATGAGGGCCATGCTGGACGCACATCCTG
ACATTCGCTGTGGAGAGGAAACCAGGGTCATTCCCCGAATCCTGGCCCTGAAGCAGATGTGGTCACGGTC
AAGTAAAGAGAAGATCCGCCTGGATGAGGCTGGTGTTACTGATGAAGTGCTGGATTCTGCCATGCAAGCC
TTCTTACTAGAAATTATCGTTAAGCATGGGGAGCCAGCCCCTTATTTATGTAATAAAGATCCTTTTGCCC
TGAAATCTTTAACTTACCTTTCTAGGTTATTCCCCAATGCCAAATTTCTCCTGATGGTCCGAGATGGCCG
GGCATCAGTACATTCAATGATTTCTCGAAAAGTTACTATAGCTGGATTTGATCTGAACAGCTATAGGGAC
TGTTTGACAAAGTGGAATCGTGCTATAGAGACCATGTATAACCAGTGTATGGAGGTTGGTTATAAAAAGT
GCATGTTGGTTCACTATGAACAACTTGTCTTACATCCTGAACGGTGGATGAGAACACTCTTAAAGTTCCT
CCAGATTCCATGGAACCACTCAGTATTGCACCATGAAGAGATGATTGGGAAAGCTGGGGGAGTGTCTCTG
TCAAAAGTGGAGAGATCTACAGACCAAGTAATCAAGCCAGTCAATGTAGGAGCTCTATCAAAATGGGTTG
GGAAGATACCGCCAGATGTTTTACAAGACATGGCAGTGATTGCTCCTATGCTTGCCAAGCTTGGATATGA
CCCATATGCCAACCCACCTAACTACGGAAAACCTGATCCCAAAATTATTGAAAACACTCGAAGGGTCTAT
AAGGGAGAATTCCAACTACCTGACTTTCTTAAAGAAAAACCACAGACTGAGCAAGTGGAGTAG

Translation (370 aa):
MVGKLKQNLLLACLVISSVTVFYLGQHAMECHHRIEERSQPVKLESTRTTVRTGLDLKANKTFAYHKDMP
LIFIGGVPRSGTTLMRAMLDAHPDIRCGEETRVIPRILALKQMWSRSSKEKIRLDEAGVTDEVLDSAMQA
FLLEIIVKHGEPAPYLCNKDPFALKSLTYLSRLFPNAKFLLMVRDGRASVHSMISRKVTIAGFDLNSYRD
CLTKWNRAIETMYNQCMEVGYKKCMLVHYEQLVLHPERWMRTLLKFLQIPWNHSVLHHEEMIGKAGGVSL
SKVERSTDQVIKPVNVGALSKWVGKIPPDVLQDMAVIAPMLAKLGYDPYANPPNYGKPDPKIIENTRRVY
KGEFQLPDFLKEKPQTEQVE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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