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Report for CCDS55027.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55027.1 Public Homo sapiens 6 LGSN 24 110 108 CCDS HistoryNCBI Gene:51557Re-query CCDS DB by CCDS ID:55027.1Re-query CCDS DB by GeneID:51557See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 55027.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370658.9 ENSP00000359692.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000370658.9Link to Ensembl Protein Viewer:ENSP00000359692.5Re-query CCDS DB by Nucleotide ID:ENST00000370658Re-query CCDS DB by Protein ID:ENSP00000359692
Original member Current member NCBI NM_001143940.2 NP_001137412.1 Accepted alive Link to Nucleotide Sequence:NM_001143940.2Link to Protein Sequence:NP_001137412.1Re-query CCDS DB by Nucleotide ID:NM_001143940Re-query CCDS DB by Protein ID:NP_001137412Link to BLAST:NP_001137412.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001137412.1 208 Q5TDP6-2 208 100% 0 0

Chromosomal Locations for CCDS 55027.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 63280503 63280600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 63281022 63281220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 63285587 63285753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 63294913 63295045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 63319914 63319943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (627 nt):
ATGAATAATGAAGAGGACCTTCTGCAGGAGGACTCAACAAGAGATGAAGGCAATGAGACTGAAGCCAACA
GCATGAACACATTAAGAAGGACAAGGAAGAAAGTCACTAAACCATATGTTTGTTCAACTGAAGTGGGAGA
AACGGATATGTCCAATTCAAATGATTGCATGAGGGACAGCAGTCAAATTTTGACCCCACCTCAACTCTCT
TCTAGAATGAAACACATTAGACAAGCCATGGCCAAAAATCGCCTCCAGTTTGTACGATTTGAAGCAACAG
ACCTCCACGGCGTGTCCAGGTCTAAGACTATCCCTGCACACTTTTTTCAAGAGAAAGTGAGCCATGGTGT
TTGCATGCCCCGAGGTTATCTTGAAGTGATACCAAATCCAAAGGACAATGAAATGAATAACATAAGAGCC
ACATGTTTTAATAGCGACATAGTCCTAATGCCAGAGTTATCAACCTTTAGAGTTTTGCCATGGGCTGACA
GAACTGCAAGAGTGATATGTGATACCTTCACTGTGACTGTCTCTGGGATGTCGATAGGAAGAAAAACATG
TTCTGCAGCACTTCTGGAACTGAGCAGCTCACGATCACTGGGAAAAAATGGTTGGCAGGACTCTTGA

Translation (208 aa):
MNNEEDLLQEDSTRDEGNETEANSMNTLRRTRKKVTKPYVCSTEVGETDMSNSNDCMRDSSQILTPPQLS
SRMKHIRQAMAKNRLQFVRFEATDLHGVSRSKTIPAHFFQEKVSHGVCMPRGYLEVIPNPKDNEMNNIRA
TCFNSDIVLMPELSTFRVLPWADRTARVICDTFTVTVSGMSIGRKTCSAALLELSSSRSLGKNGWQDS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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