NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS54964.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54964.1 Public Homo sapiens 6 CAGE1 24 110 108 CCDS HistoryNCBI Gene:285782Re-query CCDS DB by CCDS ID:54964.1Re-query CCDS DB by GeneID:285782See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54964.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000338150.8 ENSP00000338107.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000338150.8Link to Ensembl Protein Viewer:ENSP00000338107.4Re-query CCDS DB by Nucleotide ID:ENST00000338150Re-query CCDS DB by Protein ID:ENSP00000338107
Original member Current member NCBI NM_001170693.2 NP_001164164.1 Accepted alive Link to Nucleotide Sequence:NM_001170693.2Link to Protein Sequence:NP_001164164.1Re-query CCDS DB by Nucleotide ID:NM_001170693Re-query CCDS DB by Protein ID:NP_001164164Link to BLAST:NP_001164164.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001164164.1 824 Q8TC20-3 824 100% 0 0

Chromosomal Locations for CCDS 54964.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 7329165 7329266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 7329849 7329888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 7334022 7334090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 7355041 7355111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 7365468 7365575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 7365804 7365884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 7368688 7368798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 7369919 7370065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 7373073 7374131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 7378617 7379020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 7385785 7385872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 7386979 7387173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2475 nt):
ATGAACAAGGACTATCAAAAATTTTGGTCATCACCTTCAGATCCTGTACATTTTGAAGTGGATACTTCTC
ATGAAAAAGTAGAAAGCATGTCAGAATCGGATACCATGAATGTCAGCAATCTTTCTCAAGGTGTAATGCT
TTCACATTCTCCAATCTGTATGGAAACCACCGGCACCACTTGTGACTTGCCTCAGAACGAAATAAAGAAT
TTTGAAAGGGAAAATGAGTATGAATCCACACTTTGTGAAGATGCTTATGGCACACTAGACAATTTGTTAA
ATGATAACAACATTGAAAATTACTCAACGAATGCACTAATTCAGCCAGTTGACACCATCAGCATATCTTC
CTTGAGACAATTTGAAACCGTTTGCAAATTTCACTGGGTAGAAGCATTTGATGATGAAATGACAGAGAAG
CCAGAATTTCAAAGTCAAGTGTATAATTATGCAAAAGACAACAATATAAAGCAAGACTCATTTAAGGAAG
AAAATCCAATGGAAACTAGTGTTTCTGCAAATACAGACCAACTTGGTAACGAGTATTTTAGACAGCCTCC
TCCTAGAAGCCCGCCTCTAATCCACTGCAGTGGAGAGATGCTGAAATTTACAGAAAAGTCACTGGCTAAA
AGTATTGCCAAGGAATCTGCCCTCAACCCTAGCCAACCTCCAAGCTTCTTATGTAAGACTGCAGTTCCTT
CAAAAGAAATACAGAATTATGGGGAGATTCCTGAGATGTCAGTCAGTTATGAAAAGGAAGTCACAGCAGA
GGGTGTGGAGAGGCCAGAAATTGTCTCAACTTGGTCTTCGGCAGGCATTTCCTGGAGGAGTGAAGCATGT
CGGGAGAACTGTGAGATGCCTGACTGGGAGCAAAGTGCTGAAAGCTTACAACCTGTTCAAGAGGACATGG
CTTTAAATGAAGTCTTGCAGAAATTAAAACATACTAACAGAAAGCAGGAAGTGCGAATCCAAGAACTCCA
GTGTAGTAACCTGTATTTAGAGAAGAGGGTTAAAGAACTACAGATGAAGATTACCAAACAGCAAGTGTTC
ATTGATGTCATCAATAAGCTAAAGGAGAATGTTGAAGAATTAATTGAAGACAAATACAAAATAATCCTAG
AGAAGAATGATACTAAAAAGACATTGCAGAATTTGGAAGAGGTTTTAGCTAACACGCAAAAACATCTTCA
GGAATCCAGGAATGACAAGGAAATGTTACAGCTTCAATTTAAGAAGATCAAGGCTAATTATGTGTGTTTA
CAGGAAAGGTACATGACTGAAATGCAACAAAAAAATAAATCTGTAAGTCAGTATTTAGAGATGGACAAAA
CCTTAAGCAAGAAAGAAGAAGAGGTAGAGAGACTACAACAACTCAAAAAAGAACTGGAAAAGGCCACAGC
TTCTGCTTTGGACTTGTTGAAACGGGAAAAAGAGGCCCAAGAACAAGAGTTCTTGTCTTTACAGGAGGAA
TTCCAGAAACTTGAAAAGGAAAACCTGGAAGAAAGACAGAAACTGAAATCTAGACTTGAGAAATTGCTCA
CTCAAGTTAGAAATTTGCAATTTATGTCTGAAAATGAAAGAACGAAGAATATAAAACTTCAGCAGCAAAT
CAACGAAGTAAAAAATGAGAATGCAAAACTTAAACAGCAGGTTGCAAGGAGTGAAGAGCAAAATTATGTC
CCTAAATTTGAGACAGCTCAGTTAAAGGATCAATTAGAGGAAGTCTTGAAGTCAGATATTACCAAGGATA
CAAAAACGACACATTCTAATCTGCTCCCGGATTGCTCACCTTGTGAAGAGAGGCTGAATCCTGCAGATAT
AAAAAGAGCTTCTCAGCTGGCCTCCAAAATGCACAGTCTTCTGGCTCTGATGGTGGGACTTCTCACATGC
CAGGACATCATCAATTCTGATGCTGAACATTTCAAAGAGAGTGAGAAGGTTAGTGATATAATGCTGCAAA
AACTGAAGAGCCTCCATCTTAAAAAGAAAACTTTAGATAAAGAGCTACTGAAACATAAAGATAGAATCAC
AACCTTTAGAGAGTTAATTGCTAAGGAAAAAGCATTTCAAGATCATGCTATTAAGGTCATAGACTGTGAT
TCAGATGAAGCCAAGAGTATCAGAGATGTACCTACCCTTCTGGGAGCCAAACTGGATAAGTACCACAGTC
TAAATGAGGAGCTTGATTTCTTGGTTACATCATATGAAGAAATCATTGAATGTGCTGACCAAAGGCTTGC
AATATCCCACTCCCAGATTGCACATTTGGAAGAGAGAAATAAACATTTAGAGGATTTAATTAGAAAGCCC
AGAGAAAAAGCCAGAAAACCAAGATCAAAAAGCTTAGAAAATCATCCGAAGTCCATGACCATGTTGGCAT
ATAACTTGTACATATTTATAGGATACAGGCTGGGCGCGGTGGCTGACGCCTGTAATCCCAGCACTTTGGG
AGGCCGAGGCGGGTGGATCACTTGA

Translation (824 aa):
MNKDYQKFWSSPSDPVHFEVDTSHEKVESMSESDTMNVSNLSQGVMLSHSPICMETTGTTCDLPQNEIKN
FERENEYESTLCEDAYGTLDNLLNDNNIENYSTNALIQPVDTISISSLRQFETVCKFHWVEAFDDEMTEK
PEFQSQVYNYAKDNNIKQDSFKEENPMETSVSANTDQLGNEYFRQPPPRSPPLIHCSGEMLKFTEKSLAK
SIAKESALNPSQPPSFLCKTAVPSKEIQNYGEIPEMSVSYEKEVTAEGVERPEIVSTWSSAGISWRSEAC
RENCEMPDWEQSAESLQPVQEDMALNEVLQKLKHTNRKQEVRIQELQCSNLYLEKRVKELQMKITKQQVF
IDVINKLKENVEELIEDKYKIILEKNDTKKTLQNLEEVLANTQKHLQESRNDKEMLQLQFKKIKANYVCL
QERYMTEMQQKNKSVSQYLEMDKTLSKKEEEVERLQQLKKELEKATASALDLLKREKEAQEQEFLSLQEE
FQKLEKENLEERQKLKSRLEKLLTQVRNLQFMSENERTKNIKLQQQINEVKNENAKLKQQVARSEEQNYV
PKFETAQLKDQLEEVLKSDITKDTKTTHSNLLPDCSPCEERLNPADIKRASQLASKMHSLLALMVGLLTC
QDIINSDAEHFKESEKVSDIMLQKLKSLHLKKKTLDKELLKHKDRITTFRELIAKEKAFQDHAIKVIDCD
SDEAKSIRDVPTLLGAKLDKYHSLNEELDFLVTSYEEIIECADQRLAISHSQIAHLEERNKHLEDLIRKP
REKARKPRSKSLENHPKSMTMLAYNLYIFIGYRLGAVADACNPSTLGGRGGWIT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH