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Report for CCDS54820.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54820.1 Public Homo sapiens 4 PALLD 24 110 108 CCDS HistoryNCBI Gene:23022Re-query CCDS DB by CCDS ID:54820.1Re-query CCDS DB by GeneID:23022See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54820.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000507735.6 ENSP00000424016.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000507735.6Link to Ensembl Protein Viewer:ENSP00000424016.1Re-query CCDS DB by Nucleotide ID:ENST00000507735Re-query CCDS DB by Protein ID:ENSP00000424016
Original member Current member NCBI NM_001166110.2 NP_001159582.1 Accepted alive Link to Nucleotide Sequence:NM_001166110.2Link to Protein Sequence:NP_001159582.1Re-query CCDS DB by Nucleotide ID:NM_001166110Re-query CCDS DB by Protein ID:NP_001159582Link to BLAST:NP_001159582.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159582.1 672 Q8WX93-4 672 100% 0 0

Chromosomal Locations for CCDS 54820.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 168877892 168878394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168890922 168891057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168894579 168894677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168898493 168898714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168903757 168903906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168913927 168914021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168915895 168916027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168921534 168921741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168924255 168924420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168924945 168925078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168926213 168926385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2019 nt):
ATGAGCGCGCTGGCCTCCCGCTCCGCCCCCGCCATGCAGTCCTCCGGCTCCTTCAACTACGCGCGCCCCA
AGCAGTTCATCGCCGCGCAGAACCTCGGGCCCGCGTCGGGCCACGGCACGCCGGCCTCCAGCCCCAGCTC
GTCCAGCCTCCCGTCGCCCATGTCCCCGACGCCGAGGCAGTTCGGCCGCGCCCCCGTGCCGCCCTTCGCG
CAGCCCTTCGGCGCTGAGCCCGAGGCCCCGTGGGGCTCCTCCTCGCCGTCGCCCCCGCCCCCGCCACCCC
CGGTCTTCAGCCCCACGGCTGCCTTCCCGGTGCCCGACGTGTTCCCACTGCCGCCGCCACCACCGCCGCT
CCCGAGCCCGGGACAGGCGTCCCACTGCTCGTCGCCTGCCACCCGCTTCGGCCACAGCCAGACGCCCGCG
GCCTTCCTCAGCGCTCTGCTGCCCTCGCAGCCGCCGCCGGCGGCCGTCAACGCCCTGGGGCTGCCCAAGG
GTGTCACCCCCGCAGGATTTCCAAAGAAGGCCAGTAGAACTGCTAGAATAGCCTCCGATGAGGAAATTCA
AGGCACAAAGGATGCTGTTATTCAAGACCTGGAACGAAAACTTCGCTTCAAGGAGGACCTCCTGAACAAT
GGCCAGCCGAGGTTAACATACGAAGAAAGAATGGCTCGTCGACTGCTAGGTGCTGACAGTGCAACTGTCT
TTAATATTCAGGAGCCAGAAGAGGAAACAGCTAATCAGGAATACAAAGTCTCCAGCTGTGAACAGAGACT
CATCAGTGAAATAGAGTACAGGCTAGAAAGGTCTCCTGTGGATGAATCAGGTGATGAAGTTCAGTATGGA
GATGTGCCTGTGGAAAATGGAATGGCACCATTCTTTGAGATGAAGCTGAAACATTACAAGATCTTTGAGG
GAATGCCAGTAACTTTCACATGTAGAGTGGCTGGAAATCCAAAGCCAAAGATCTATTGGTTTAAAGATGG
GAAGCAGATCTCTCCAAAGAGTGATCACTACACCATTCAAAGAGATCTCGATGGGACCTGCTCCCTCCAT
ACCACAGCCTCCACCCTAGATGATGATGGGAATTATACAATTATGGCTGCAAACCCTCAGGGCCGCATCA
GTTGTACTGGACGGCTAATGGTACAGGCTGTCAACCAAAGAGGTCGAAGTCCCCGGTCTCCCTCAGGCCA
TCCTCATGTCAGAAGGCCTCGTTCTAGATCAAGGGACAGTGGAGACGAAAATGAACCAATTCAGGAGCGA
TTCTTCAGACCTCACTTCTTGCAGGCTCCTGGAGATCTGACTGTTCAAGAAGGAAAACTCTGCAGAATGG
ACTGCAAAGTCAGTGGGTTACCAACCCCAGATCTAAGCTGGCAACTAGATGGAAAGCCCGTACGCCCTGA
CAGTGCTCACAAGATGCTGGTGCGTGAGAACGGGGTGCACTCTCTGATCATAGAGCCAGTCACGTCACGT
GATGCCGGCATCTACACATGTATAGCTACCAACCGAGCAGGACAGAACTCATTCAGCCTGGAGCTTGTGG
TTGCTGCTAAAGAAGCACACAAACCCCCTGTGTTTATTGAGAAGCTCCAAAACACAGGAGTTGCTGATGG
GTACCCAGTGCGGCTGGAATGTCGTGTATTGGGAGTGCCACCACCTCAGATATTTTGGAAGAAAGAAAAT
GAATCACTCACTCACAGCACTGACCGAGTGAGCATGCACCAGGACAACCACGGCTACATCTGCCTGCTCA
TTCAGGGAGCCACAAAAGAAGATGCTGGGTGGTATACTGTGTCAGCCAAGAATGAAGCAGGGATTGTGTC
CTGTACTGCCAGGCTGGACGTTTACACCCAGTGGCATCAGCAGTCACAGAGCACCAAGCCAAAAAAAGTA
CGGCCCTCAGCCAGTCGCTATGCAGCACTTTCGGACCAGGGACTAGACATCAAAGCAGCGTTCCAACCTG
AGGCCAACCCATCTCACCTGACACTGAATACTGCCTTGGTAGAAAGTGAGGACCTGTAA

Translation (672 aa):
MSALASRSAPAMQSSGSFNYARPKQFIAAQNLGPASGHGTPASSPSSSSLPSPMSPTPRQFGRAPVPPFA
QPFGAEPEAPWGSSSPSPPPPPPPVFSPTAAFPVPDVFPLPPPPPPLPSPGQASHCSSPATRFGHSQTPA
AFLSALLPSQPPPAAVNALGLPKGVTPAGFPKKASRTARIASDEEIQGTKDAVIQDLERKLRFKEDLLNN
GQPRLTYEERMARRLLGADSATVFNIQEPEEETANQEYKVSSCEQRLISEIEYRLERSPVDESGDEVQYG
DVPVENGMAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLH
TTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNQRGRSPRSPSGHPHVRRPRSRSRDSGDENEPIQER
FFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSR
DAGIYTCIATNRAGQNSFSLELVVAAKEAHKPPVFIEKLQNTGVADGYPVRLECRVLGVPPPQIFWKKEN
ESLTHSTDRVSMHQDNHGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDVYTQWHQQSQSTKPKKV
RPSASRYAALSDQGLDIKAAFQPEANPSHLTLNTALVESEDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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