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Report for CCDS54713.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54713.1 Public Homo sapiens 4 RNF4 24 110 108 CCDS HistoryNCBI Gene:6047Re-query CCDS DB by CCDS ID:54713.1Re-query CCDS DB by GeneID:6047See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54713.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000511859.5 ENSP00000426615.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000511859.5Link to Ensembl Protein Viewer:ENSP00000426615.1Re-query CCDS DB by Nucleotide ID:ENST00000511859Re-query CCDS DB by Protein ID:ENSP00000426615
Original member Current member EBI ENST00000541204.5 ENSP00000446369.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000541204.5Link to Ensembl Protein Viewer:ENSP00000446369.2Re-query CCDS DB by Nucleotide ID:ENST00000541204Re-query CCDS DB by Protein ID:ENSP00000446369
Original member Current member NCBI NM_001185010.3 NP_001171939.1 Accepted alive Link to Nucleotide Sequence:NM_001185010.3Link to Protein Sequence:NP_001171939.1Re-query CCDS DB by Nucleotide ID:NM_001185010Re-query CCDS DB by Protein ID:NP_001171939Link to BLAST:NP_001171939.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171939.1 113 P78317-2 113 100% 0 0

Chromosomal Locations for CCDS 54713.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 2490494 2490502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2497007 2497121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2500659 2500738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2511956 2511965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2513083 2513131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2513670 2513748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (342 nt):
ATGAGTACAAGAAAGCGTCGTGGTGGAGCAATAAATTCTAGACAAGCTCAGAAGCGAACTCGGGAAGCAA
CCTCCACCCCCGAGATCTCCTTGGAAGCAGAACCCATAGAACTCGTGGAAACTGCTGGAGATGAAATTGT
GGACCTCACTTGTGAATCTTTAGAGCCTGTGGTGGTTGATCTGACTCACAATGACTCTGTTGTGATTGTT
GACGGCCCTCAGGTACTGTCAGTTGTCCCATCTGCATGGACGGATACTCAGAGATCGTGCAGAATGGACG
TCTCATCGTTTCCACAGAATGCGGCCATGTCTTCTGTAGCCAGTGCCTCCGTGATTCCCTGA

Translation (113 aa):
MSTRKRRGGAINSRQAQKRTREATSTPEISLEAEPIELVETAGDEIVDLTCESLEPVVVDLTHNDSVVIV
DGPQVLSVVPSAWTDTQRSCRMDVSSFPQNAAMSSVASASVIP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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