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Report for CCDS5471.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5471.1 Public Homo sapiens 7 COA1 24 110 108 CCDS HistoryNCBI Gene:55744Re-query CCDS DB by CCDS ID:5471.1Re-query CCDS DB by GeneID:55744See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5471.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000223336.11 ENSP00000223336.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000223336.11Link to Ensembl Protein Viewer:ENSP00000223336.6Re-query CCDS DB by Nucleotide ID:ENST00000223336Re-query CCDS DB by Protein ID:ENSP00000223336
Original member Current member EBI ENST00000310564.10 ENSP00000312100.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000310564.10Link to Ensembl Protein Viewer:ENSP00000312100.6Re-query CCDS DB by Nucleotide ID:ENST00000310564Re-query CCDS DB by Protein ID:ENSP00000312100
Original member Current member EBI ENST00000395879.5 ENSP00000379218.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000395879.5Link to Ensembl Protein Viewer:ENSP00000379218.1Re-query CCDS DB by Nucleotide ID:ENST00000395879Re-query CCDS DB by Protein ID:ENSP00000379218
Original member Current member EBI ENST00000438444.5 ENSP00000395586.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000438444.5Link to Ensembl Protein Viewer:ENSP00000395586.1Re-query CCDS DB by Nucleotide ID:ENST00000438444Re-query CCDS DB by Protein ID:ENSP00000395586
Original member Current member EBI ENST00000415076.6 ENSP00000400759.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000415076.6Link to Ensembl Protein Viewer:ENSP00000400759.1Re-query CCDS DB by Nucleotide ID:ENST00000415076Re-query CCDS DB by Protein ID:ENSP00000400759
Original member Current member EBI ENST00000446564.5 ENSP00000413777.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000446564.5Link to Ensembl Protein Viewer:ENSP00000413777.1Re-query CCDS DB by Nucleotide ID:ENST00000446564Re-query CCDS DB by Protein ID:ENSP00000413777
Original member Current member EBI ENST00000446330.6 ENSP00000416406.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000446330.6Link to Ensembl Protein Viewer:ENSP00000416406.1Re-query CCDS DB by Nucleotide ID:ENST00000446330Re-query CCDS DB by Protein ID:ENSP00000416406
Original member Current member NCBI NM_001321197.2 NP_001308126.1 Accepted alive Link to Nucleotide Sequence:NM_001321197.2Link to Protein Sequence:NP_001308126.1Re-query CCDS DB by Nucleotide ID:NM_001321197Re-query CCDS DB by Protein ID:NP_001308126Link to BLAST:NP_001308126.1
Original member Current member NCBI NM_001321198.2 NP_001308127.1 Accepted alive Link to Nucleotide Sequence:NM_001321198.2Link to Protein Sequence:NP_001308127.1Re-query CCDS DB by Nucleotide ID:NM_001321198Re-query CCDS DB by Protein ID:NP_001308127Link to BLAST:NP_001308127.1
Original member Current member NCBI NM_001321199.2 NP_001308128.1 Accepted alive Link to Nucleotide Sequence:NM_001321199.2Link to Protein Sequence:NP_001308128.1Re-query CCDS DB by Nucleotide ID:NM_001321199Re-query CCDS DB by Protein ID:NP_001308128Link to BLAST:NP_001308128.1
Original member Current member NCBI NM_001321200.2 NP_001308129.1 Accepted alive Link to Nucleotide Sequence:NM_001321200.2Link to Protein Sequence:NP_001308129.1Re-query CCDS DB by Nucleotide ID:NM_001321200Re-query CCDS DB by Protein ID:NP_001308129Link to BLAST:NP_001308129.1
Original member Current member NCBI NM_001350924.2 NP_001337853.1 Accepted alive Link to Nucleotide Sequence:NM_001350924.2Link to Protein Sequence:NP_001337853.1Re-query CCDS DB by Nucleotide ID:NM_001350924Re-query CCDS DB by Protein ID:NP_001337853Link to BLAST:NP_001337853.1
Original member Current member NCBI NM_001350925.2 NP_001337854.1 Accepted alive Link to Nucleotide Sequence:NM_001350925.2Link to Protein Sequence:NP_001337854.1Re-query CCDS DB by Nucleotide ID:NM_001350925Re-query CCDS DB by Protein ID:NP_001337854Link to BLAST:NP_001337854.1
Original member Current member NCBI NM_001350926.2 NP_001337855.1 Accepted alive Link to Nucleotide Sequence:NM_001350926.2Link to Protein Sequence:NP_001337855.1Re-query CCDS DB by Nucleotide ID:NM_001350926Re-query CCDS DB by Protein ID:NP_001337855Link to BLAST:NP_001337855.1
Original member Current member NCBI NM_001350927.2 NP_001337856.1 Accepted alive Link to Nucleotide Sequence:NM_001350927.2Link to Protein Sequence:NP_001337856.1Re-query CCDS DB by Nucleotide ID:NM_001350927Re-query CCDS DB by Protein ID:NP_001337856Link to BLAST:NP_001337856.1
Original member Current member NCBI NM_001371307.1 NP_001358236.1 Accepted alive Link to Nucleotide Sequence:NM_001371307.1Link to Protein Sequence:NP_001358236.1Re-query CCDS DB by Nucleotide ID:NM_001371307Re-query CCDS DB by Protein ID:NP_001358236Link to BLAST:NP_001358236.1
Original member Current member NCBI NM_001371308.1 NP_001358237.1 Accepted alive Link to Nucleotide Sequence:NM_001371308.1Link to Protein Sequence:NP_001358237.1Re-query CCDS DB by Nucleotide ID:NM_001371308Re-query CCDS DB by Protein ID:NP_001358237Link to BLAST:NP_001358237.1
Original member Current member NCBI NM_001371309.1 NP_001358238.1 Accepted alive Link to Nucleotide Sequence:NM_001371309.1Link to Protein Sequence:NP_001358238.1Re-query CCDS DB by Nucleotide ID:NM_001371309Re-query CCDS DB by Protein ID:NP_001358238Link to BLAST:NP_001358238.1
Original member Current member NCBI NM_001371310.1 NP_001358239.1 Accepted alive Link to Nucleotide Sequence:NM_001371310.1Link to Protein Sequence:NP_001358239.1Re-query CCDS DB by Nucleotide ID:NM_001371310Re-query CCDS DB by Protein ID:NP_001358239Link to BLAST:NP_001358239.1
Original member Current member NCBI NM_001371311.1 NP_001358240.1 Accepted alive Link to Nucleotide Sequence:NM_001371311.1Link to Protein Sequence:NP_001358240.1Re-query CCDS DB by Nucleotide ID:NM_001371311Re-query CCDS DB by Protein ID:NP_001358240Link to BLAST:NP_001358240.1
Original member Current member NCBI NM_001371312.1 NP_001358241.1 Accepted alive Link to Nucleotide Sequence:NM_001371312.1Link to Protein Sequence:NP_001358241.1Re-query CCDS DB by Nucleotide ID:NM_001371312Re-query CCDS DB by Protein ID:NP_001358241Link to BLAST:NP_001358241.1
Original member Current member NCBI NM_001371313.1 NP_001358242.1 Accepted alive Link to Nucleotide Sequence:NM_001371313.1Link to Protein Sequence:NP_001358242.1Re-query CCDS DB by Nucleotide ID:NM_001371313Re-query CCDS DB by Protein ID:NP_001358242Link to BLAST:NP_001358242.1
Original member Current member NCBI NM_001371314.1 NP_001358243.1 Accepted alive Link to Nucleotide Sequence:NM_001371314.1Link to Protein Sequence:NP_001358243.1Re-query CCDS DB by Nucleotide ID:NM_001371314Re-query CCDS DB by Protein ID:NP_001358243Link to BLAST:NP_001358243.1
Original member Current member NCBI NM_001371315.1 NP_001358244.1 Accepted alive Link to Nucleotide Sequence:NM_001371315.1Link to Protein Sequence:NP_001358244.1Re-query CCDS DB by Nucleotide ID:NM_001371315Re-query CCDS DB by Protein ID:NP_001358244Link to BLAST:NP_001358244.1
Original member Current member NCBI NM_001371316.1 NP_001358245.1 Accepted alive Link to Nucleotide Sequence:NM_001371316.1Link to Protein Sequence:NP_001358245.1Re-query CCDS DB by Nucleotide ID:NM_001371316Re-query CCDS DB by Protein ID:NP_001358245Link to BLAST:NP_001358245.1
Original member Current member NCBI NM_018224.4 NP_060694.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018224.4Link to Protein Sequence:NP_060694.2Re-query CCDS DB by Nucleotide ID:NM_018224Re-query CCDS DB by Protein ID:NP_060694Link to BLAST:NP_060694.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001308126.1 146 Q9GZY4 146 100% 0 0
NP_001308127.1 146 Q9GZY4 146 100% 0 0
NP_001308128.1 146 Q9GZY4 146 100% 0 0
NP_001308129.1 146 Q9GZY4 146 100% 0 0
NP_001337853.1 146 Q9GZY4 146 100% 0 0
NP_001337854.1 146 Q9GZY4 146 100% 0 0
NP_001337855.1 146 Q9GZY4 146 100% 0 0
NP_001337856.1 146 Q9GZY4 146 100% 0 0
NP_001358236.1 146 Q9GZY4 146 100% 0 0
NP_001358237.1 146 Q9GZY4 146 100% 0 0
NP_001358238.1 146 Q9GZY4 146 100% 0 0
NP_001358239.1 146 Q9GZY4 146 100% 0 0
NP_001358240.1 146 Q9GZY4 146 100% 0 0
NP_001358241.1 146 Q9GZY4 146 100% 0 0
NP_001358242.1 146 Q9GZY4 146 100% 0 0
NP_001358243.1 146 Q9GZY4 146 100% 0 0
NP_001358244.1 146 Q9GZY4 146 100% 0 0
NP_001358245.1 146 Q9GZY4 146 100% 0 0
NP_060694.2 146 Q9GZY4 146 100% 0 0

Chromosomal Locations for CCDS 5471.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 43639582 43639681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43640573 43640649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43645251 43645399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43647535 43647634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43648600 43648614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (441 nt):
ATGATGTGGCAAAAGTATGCAGGAAGCAGGCGGTCAATGCCTCTGGGAGCAAGGATCCTTTTCCACGGTG
TGTTCTATGCCGGGGGCTTTGCCATTGTGTATTACCTCATTCAAAAGTTTCATTCCAGGGCTTTATATTA
CAAGTTGGCAGTGGAGCAGCTGCAGAGCCATCCCGAGGCACAGGAAGCTCTGGGCCCTCCTCTCAACATC
CATTATCTCAAGCTCATCGACAGGGAAAACTTCGTGGACATTGTTGATGCCAAGTTGAAGATTCCTGTCT
CTGGATCCAAATCAGAGGGCCTTCTCTACGTCCACTCATCCAGAGGTGGCCCCTTTCAGAGGTGGCACCT
TGACGAGGTCTTTTTAGAGCTCAAGGATGGTCAGCAGATTCCTGTGTTCAAGCTCAGTGGGGAAAACGGT
GATGAAGTGAAAAAGGAGTAG

Translation (146 aa):
MMWQKYAGSRRSMPLGARILFHGVFYAGGFAIVYYLIQKFHSRALYYKLAVEQLQSHPEAQEALGPPLNI
HYLKLIDRENFVDIVDAKLKIPVSGSKSEGLLYVHSSRGGPFQRWHLDEVFLELKDGQQIPVFKLSGENG
DEVKKE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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