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Report for CCDS54633.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54633.1 Public Homo sapiens 3 PARP9 24 110 108 CCDS HistoryNCBI Gene:83666Re-query CCDS DB by CCDS ID:54633.1Re-query CCDS DB by GeneID:83666See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54633.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000462315.5 ENSP00000418894.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000462315.5Link to Ensembl Protein Viewer:ENSP00000418894.1Re-query CCDS DB by Nucleotide ID:ENST00000462315Re-query CCDS DB by Protein ID:ENSP00000418894
Original member Current member NCBI NM_001146106.3 NP_001139578.1 Accepted alive Link to Nucleotide Sequence:NM_001146106.3Link to Protein Sequence:NP_001139578.1Re-query CCDS DB by Nucleotide ID:NM_001146106Re-query CCDS DB by Protein ID:NP_001139578Link to BLAST:NP_001139578.1
Original member Current member NCBI NM_001387885.1 NP_001374814.1 Accepted alive Link to Nucleotide Sequence:NM_001387885.1Link to Protein Sequence:NP_001374814.1Re-query CCDS DB by Nucleotide ID:NM_001387885Re-query CCDS DB by Protein ID:NP_001374814Link to BLAST:NP_001374814.1
Original member Current member NCBI NM_001387886.1 NP_001374815.1 Accepted alive Link to Nucleotide Sequence:NM_001387886.1Link to Protein Sequence:NP_001374815.1Re-query CCDS DB by Nucleotide ID:NM_001387886Re-query CCDS DB by Protein ID:NP_001374815Link to BLAST:NP_001374815.1
Original member Current member NCBI NM_001387887.1 NP_001374816.1 Accepted alive Link to Nucleotide Sequence:NM_001387887.1Link to Protein Sequence:NP_001374816.1Re-query CCDS DB by Nucleotide ID:NM_001387887Re-query CCDS DB by Protein ID:NP_001374816Link to BLAST:NP_001374816.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139578.1 710 Q8IXQ6-3 710 100% 0 0
NP_001374814.1 710 Q8IXQ6-3 710 100% 0 0
NP_001374815.1 710 Q8IXQ6-3 710 100% 0 0
NP_001374816.1 710 Q8IXQ6-3 710 100% 0 0

Chromosomal Locations for CCDS 54633.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 122536115 122536342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122536934 122537073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122540472 122540852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122545432 122545489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122550584 122550802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122552418 122552639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122555286 122556121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122558434 122558467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122559606 122559620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2133 nt):
ATGGACTTTTCCATGGTGGCCGGAGCAGCAGCTTACAATGAAAAATCAGAGACTGGTGCTCTTGGAGAAA
ACTATAGTTGGCAAATTCCCATTAACCACAATGACTTCAAAATTTTAAAAAATAATGAGCGTCAGCTGTG
TGAAGTCCTCCAGAATAAGTTTGGCTGTATCTCTACCCTGGTCTCTCCAGTTCAGGAAGGCAACAGCAAA
TCTCTGCAAGTGTTCAGAAAAATGCTGACTCCTAGGATAGAGTTATCAGTCTGGAAAGATGACCTCACCA
CACATGCTGTTGATGCTGTGGTGAATGCAGCCAATGAAGATCTTCTGCATGGGGGAGGCCTGGCCCTGGC
CCTGGTAAAAGCTGGTGGATTTGAAATCCAAGAAGAGAGCAAACAGTTTGTTGCCAGATATGGTAAAGTG
TCAGCTGGTGAGATAGCTGTCACGGGAGCAGGGAGGCTTCCCTGCAAACAGATCATCCATGCTGTTGGGC
CTCGGTGGATGGAATGGGATAAACAGGGATGTACTGGAAAGCTGCAGAGGGCCATTGTAAGTATTCTGAA
TTATGTCATCTATAAAAATACTCACATTAAGACAGTAGCAATTCCAGCCTTGAGCTCTGGGATTTTTCAG
TTCCCTCTGAATTTGTGTACAAAGACTATTGTAGAGACTATCCGGGTTAGTTTGCAAGGGAAGCCAATGA
TGAGTAATTTGAAAGAAATTCACCTGGTGAGCAATGAGGACCCTACTGTTGCTGCCTTTAAAGCTGCTTC
AGAATTCATCCTAGGGAAGAGTGAGCTGGGACAAGAAACCACCCCTTCTTTCAATGCAATGGTCGTGAAC
AACCTGACCCTCCAGATTGTCCAGGGCCACATTGAATGGCAGACGGCAGATGTAATTGTTAATTCTGTAA
ACCCACATGATATTACAGTTGGACCTGTGGCAAAGTCAATTCTACAACAAGCAGGAGTTGAAATGAAATC
GGAATTTCTTGCCACAAAGGCTAAACAGTTTCAACGGTCCCAGTTGGTACTGGTCACAAAAGGATTTAAC
TTGTTCTGTAAATATATATACCATGTACTGTGGCATTCAGAATTTCCTAAACCTCAGATATTAAAACATG
CAATGAAGGAGTGTTTGGAAAAATGCATTGAGCAAAATATAACTTCCATTTCCTTTCCTGCCCTTGGGAC
TGGAAACATGGAAATAAAGAAGGAAACAGCAGCAGAGATTTTGTTTGATGAAGTTTTAACATTTGCCAAA
GACCATGTAAAACACCAGTTAACTGTAAAATTTGTGATCTTTCCAACAGATTTGGAGATATATAAGGCTT
TCAGTTCTGAAATGGCAAAGAGGTCCAAGATGCTGAGTTTGAACAATTACAGTGTCCCCCAGTCAACCAG
AGAGGAGAAAAGAGAAAATGGGCTTGAAGCTAGATCTCCTGCCATCAATCTGATGGGATTCAACGTGGAA
GAGATGTATGAGGCCCACGCATGGATCCAAAGAATCCTGAGTCTCCAGAACCACCACATCATTGAGAATA
ATCATATTCTGTACCTTGGGAGAAAGGAACATGACATTTTGTCTCAGCTTCAGAAAACTTCAAGTGTCTC
CATCACAGAAATTATCAGCCCAGGAAGGACAGAGTTAGAGATTGAAGGAGCCCGGGCTGACCTCATTGAG
GTGGTTATGAACATTGAAGATATGCTTTGTAAAGTACAGGAGGAAATGGCAAGGAAAAAGGAGCGAGGCC
TTTGGCGCTCGTTAGGACAGTGGACTATTCAGCAACAAAAAACCCAAGACGAAATGAAAGAAAATATCAT
ATTTCTGAAATGTCCTGTGCCTCCAACTCAAGAGCTTCTAGATCAAAAGAAACAGTTTGAAAAATGTGGT
TTGCAGGTTCTAAAGGTGGAGAAGATAGACAATGAGGTCCTTATGGCTGCCTTTCAAAGAAAGAAGAAAA
TGATGGAAGAAAAACTGCACAGGCAACCTGTGAGCCATAGGCTGTTTCAGCAAGTCCCATACCAGTTCTG
CAATGTGGTATGCAGAGTTGGCTTTCAAAGAATGTACTCGACACCTTGCGGTAGGTGTCAATGCCTCATC
ATTGGGGCTACTCTGTGGAATTTGGTGAGCTGA

Translation (710 aa):
MDFSMVAGAAAYNEKSETGALGENYSWQIPINHNDFKILKNNERQLCEVLQNKFGCISTLVSPVQEGNSK
SLQVFRKMLTPRIELSVWKDDLTTHAVDAVVNAANEDLLHGGGLALALVKAGGFEIQEESKQFVARYGKV
SAGEIAVTGAGRLPCKQIIHAVGPRWMEWDKQGCTGKLQRAIVSILNYVIYKNTHIKTVAIPALSSGIFQ
FPLNLCTKTIVETIRVSLQGKPMMSNLKEIHLVSNEDPTVAAFKAASEFILGKSELGQETTPSFNAMVVN
NLTLQIVQGHIEWQTADVIVNSVNPHDITVGPVAKSILQQAGVEMKSEFLATKAKQFQRSQLVLVTKGFN
LFCKYIYHVLWHSEFPKPQILKHAMKECLEKCIEQNITSISFPALGTGNMEIKKETAAEILFDEVLTFAK
DHVKHQLTVKFVIFPTDLEIYKAFSSEMAKRSKMLSLNNYSVPQSTREEKRENGLEARSPAINLMGFNVE
EMYEAHAWIQRILSLQNHHIIENNHILYLGRKEHDILSQLQKTSSVSITEIISPGRTELEIEGARADLIE
VVMNIEDMLCKVQEEMARKKERGLWRSLGQWTIQQQKTQDEMKENIIFLKCPVPPTQELLDQKKQFEKCG
LQVLKVEKIDNEVLMAAFQRKKKMMEEKLHRQPVSHRLFQQVPYQFCNVVCRVGFQRMYSTPCGRCQCLI
IGATLWNLVS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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