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Report for CCDS54625.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54625.1 Public Homo sapiens 3 GRAMD1C 24 110 108 CCDS HistoryNCBI Gene:54762Re-query CCDS DB by CCDS ID:54625.1Re-query CCDS DB by GeneID:54762See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54625.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000440446.2 ENSP00000408135.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000440446.2Link to Ensembl Protein Viewer:ENSP00000408135.2Re-query CCDS DB by Nucleotide ID:ENST00000440446Re-query CCDS DB by Protein ID:ENSP00000408135
Original member Current member NCBI NM_001172105.2 NP_001165576.1 Accepted alive Link to Nucleotide Sequence:NM_001172105.2Link to Protein Sequence:NP_001165576.1Re-query CCDS DB by Nucleotide ID:NM_001172105Re-query CCDS DB by Protein ID:NP_001165576Link to BLAST:NP_001165576.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001165576.1 457 Q8IYS0-2 457 100% 0 0

Chromosomal Locations for CCDS 54625.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 113901106 113901146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113904140 113904272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113908958 113909120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113915701 113915838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113930714 113930832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113933511 113933653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113934432 113934535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113936266 113936442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113938086 113938143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113939886 113939996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113940240 113940345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113945398 113945478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1374 nt):
ATGGAAAACTTGTCACTGTCGATTGAGGATGTGCAGCCAAGAAGTCCAGGAAGAAGCAGCTTGGATGACT
CTGGGGAGAGAGATGAAAAATTATCCAAGTCAATCAGTTTTACCAGTGAATCAATTAGTCGGGTTTCAGA
AACAGAGTCATTCGATGGAAATTCATCAAAAGGAGGATTAGGCAAAGAGGAGTCCCAAAATGAGAAACAG
ACCAAAAAGAGTCTCTTACCAACTTTGGAAAAGAAGTTAACTAGAGTGCCATCAAAGTCACTGGACTTGA
ATAAAAATGAATATCTTTCTCTGGACAAAAGCAGCACTTCAGATTCTGTTGATGAAGAAAATGTTCCTGA
GAAAGATCTTCATGGAAGACTTTTTATCAACCGTATTTTTCATATCAGTGCTGACAGAATGTTTGAATTG
CTCTTTACCAGTTCACGCTTTATGCAGAAATTTGCCAGTTCTAGAAATATAATAGATGTAGTATCTACCC
CTTGGACTGCAGAACTTGGAGGTGATCAGCTGAGAACGATGACCTACACTATAGTCCTTAATAGTCCACT
TACTGGAAAATGCACTGCTGCCACTGAAAAGCAGACACTGTATAAAGAAAGTCGGGAAGCACGATTTTAT
TTGGTAGATTCAGAAGTACTGACACATGATGTCCCCTACCATGATTACTTCTATACCGTGAACAGATACT
GTATCATCCGATCTTCAAAACAGAAATGCAGGCTAAGAGTTTCCACAGATTTGAAATACAGAAAACAGCC
ATGGGGCCTTGTCAAATCTTTAATTGAAAAGAATTCCTGGAGTTCTTTGGAGGACTATTTCAAACAGCTT
GAATCAGATTTGTTAATTGAAGAATCTGTATTAAATCAGGCCATTGAAGACCCTGGAAAACTTACTGGCC
TACGAAGGAGAAGGCGAACCTTCAACCGAACAGCAGAAACAGTTCCTAAACTTTCCTCTCAGCATTCCTC
TGGAGATGTGGGCTTAGGTGCCAAAGGGGATATTACAGGAAAGAAAAAGGAAATGGAAAACTATAACGTC
ACTCTTATTGTGGTAATGAGTATTTTTGTGTTGTTATTAGTTTTGTTGAATGTGACACTGTTTCTGAAGC
TGTCAAAGATAGAACATGCTGCTCAGTCCTTTTACCGTCTCCGCCTCCAAGAAGAGAAATCTTTAAATTT
AGCCTCTGATATGGTGTCAAGAGCAGAAACTATTCAGAAGAATAAAGATCAGGCCCATCGTTTAAAGGGA
GTGCTCCGAGACTCCATAGTGATGCTTGAACAGCTGAAGAGCTCACTCATTATGCTTCAGAAAACGTTTG
ATCTACTAAATAAGAATAAGACTGGCATGGCTGTTGAAAGCTAG

Translation (457 aa):
MENLSLSIEDVQPRSPGRSSLDDSGERDEKLSKSISFTSESISRVSETESFDGNSSKGGLGKEESQNEKQ
TKKSLLPTLEKKLTRVPSKSLDLNKNEYLSLDKSSTSDSVDEENVPEKDLHGRLFINRIFHISADRMFEL
LFTSSRFMQKFASSRNIIDVVSTPWTAELGGDQLRTMTYTIVLNSPLTGKCTAATEKQTLYKESREARFY
LVDSEVLTHDVPYHDYFYTVNRYCIIRSSKQKCRLRVSTDLKYRKQPWGLVKSLIEKNSWSSLEDYFKQL
ESDLLIEESVLNQAIEDPGKLTGLRRRRRTFNRTAETVPKLSSQHSSGDVGLGAKGDITGKKKEMENYNV
TLIVVMSIFVLLLVLLNVTLFLKLSKIEHAAQSFYRLRLQEEKSLNLASDMVSRAETIQKNKDQAHRLKG
VLRDSIVMLEQLKSSLIMLQKTFDLLNKNKTGMAVES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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