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Report for CCDS54432.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54432.1 Public Homo sapiens 2 SPEG 24 110 108 CCDS HistoryNCBI Gene:10290Re-query CCDS DB by CCDS ID:54432.1Re-query CCDS DB by GeneID:10290See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54432.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000396686.5 ENSP00000379917.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396686.5Link to Ensembl Protein Viewer:ENSP00000379917.1Re-query CCDS DB by Nucleotide ID:ENST00000396686Re-query CCDS DB by Protein ID:ENSP00000379917
Original member Current member EBI ENST00000396688.5 ENSP00000379919.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396688.5Link to Ensembl Protein Viewer:ENSP00000379919.1Re-query CCDS DB by Nucleotide ID:ENST00000396688Re-query CCDS DB by Protein ID:ENSP00000379919
Original member Current member EBI ENST00000396689.2 ENSP00000379920.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396689.2Link to Ensembl Protein Viewer:ENSP00000379920.2Re-query CCDS DB by Nucleotide ID:ENST00000396689Re-query CCDS DB by Protein ID:ENSP00000379920
Original member Current member NCBI NM_001173476.2 NP_001166947.1 Accepted alive Link to Nucleotide Sequence:NM_001173476.2Link to Protein Sequence:NP_001166947.1Re-query CCDS DB by Nucleotide ID:NM_001173476Re-query CCDS DB by Protein ID:NP_001166947Link to BLAST:NP_001166947.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001166947.1 113 Q15772-4 113 100% 0 0

Chromosomal Locations for CCDS 54432.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 219461989 219462057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219462298 219462386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219464433 219464608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219466057 219466064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (342 nt):
ATGAAGCCCAGTCCCAGCCAGAACCGCCGTTCTTCTGACACTGGCTCCAAGGCACCCCCCACCTTCAAGG
TCTCACTTATGGACCAGTCAGTAAGAGAAGGCCAAGATGTCATCATGAGCATCCGCGTGCAGGGGGAGCC
CAAGCCTGTGGTCTCCTGGCTGAGAAACCGCCAGCCCGTGCGCCCAGACCAGCGGCGCTTTGCGGAGGAG
GCTGAGGGTGGGCTGTGCCGGCTGCGGATCCTGGCTGCAGAGCGTGGCGATGCTGGTTTCTACACTTGCA
AAGCGGTCAATGAGTATGGTGCTCGGCAGTGCGAGGCCCGCTTGGAGGTCCGAGGCGAGTGA

Translation (113 aa):
MKPSPSQNRRSSDTGSKAPPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEE
AEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVRGE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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