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Report for CCDS54402.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54402.1 Public Homo sapiens 2 RAB3GAP1 24 110 108 CCDS HistoryNCBI Gene:22930Re-query CCDS DB by CCDS ID:54402.1Re-query CCDS DB by GeneID:22930See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54402.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000442034.5 ENSP00000411418.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000442034.5Link to Ensembl Protein Viewer:ENSP00000411418.1Re-query CCDS DB by Nucleotide ID:ENST00000442034Re-query CCDS DB by Protein ID:ENSP00000411418
Original member Current member NCBI NM_001172435.2 NP_001165906.1 Accepted alive Link to Nucleotide Sequence:NM_001172435.2Link to Protein Sequence:NP_001165906.1Re-query CCDS DB by Nucleotide ID:NM_001172435Re-query CCDS DB by Protein ID:NP_001165906Link to BLAST:NP_001165906.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001165906.1 988 Q15042-3 988 100% 0 0

Chromosomal Locations for CCDS 54402.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 135052308 135052325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135052430 135052485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135058011 135058086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135090998 135091130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135093615 135093693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135113151 135113270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135115216 135115381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135120819 135120918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135124165 135124246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135126181 135126249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135126583 135126656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135129995 135130087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135130552 135130721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135132895 135132984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135133861 135134033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135135265 135135319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135135564 135135932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135150369 135150506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135153649 135153876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135162555 135162651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135162748 135162851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135162986 135163101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135164594 135164696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135167693 135167713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135168545 135168781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2967 nt):
ATGGCTGCCGACAGTGAGCCCGAATCCGAGGTATTTGAGATCACGGACTTCACCACTGCCTCGGAATGGG
AAAGGTTTATTTCCAAAGTTGAAGAAGTCTTGAATGACTGGAAACTGATTGGAAACTCTTTGGGAAAGCC
ACTCGAAAAGGGTATATTTACTTCTGGCACATGGGAAGAGAAATCAGATGAAATTTCCTTTGCTGACTTC
AAGTTCTCAGTCACTCATCATTATCTTGTACAAGAGTCCACTGATAAAGAAGGAAAGGATGAGTTATTAG
AGGATGTTGTTCCACAATCTATGCAAGATTTGCTGGGTATGAATAATGACTTTCCTCCAAGAGCACATTG
CCTGGTAAGATGGTATGGGCTACGTGAGTTCGTGGTGATTGCCCCTGCTGCACACAGTGACGCTGTTCTC
AGCGAATCTAAGTGCAACCTTCTTCTGAGTTCTGTTTCTATTGCCTTGGGAAACACTGGCTGTCAGGTGC
CACTCTTTGTGCAAATTCACCACAAATGGCGAAGAATGTATGTAGGAGAATGTCAAGGTCCTGGTGTACG
AACTGATTTCGAAATGGTTCATCTTAGAAAAGTGCCAAATCAGTACACTCACTTATCAGGTCTGCTGGAT
ATCTTCAAATCAAAGATTGGATGTCCTTTAACTCCATTGCCTCCAGTTAGTATTGCTATTCGATTTACCT
ATGTACTTCAAGATTGGCAGCAGTATTTTTGGCCTCAGCAACCTCCAGACATAGATGCCCTTGTAGGAGG
AGAAGTTGGAGGCTTGGAGTTTGGCAAGTTACCATTTGGTGCCTGCGAAGATCCTATTAGTGAACTCCAT
TTAGCTACTACATGGCCTCATCTGACCGAAGGGATCATTGTGGATAATGATGTTTATTCTGATTTGGATC
CTATTCAAGCTCCACATTGGTCTGTTAGAGTTCGAAAAGCTGAGAATCCTCAGTGTTTGCTAGGTGATTT
TGTCACTGAATTTTTTAAAATTTGCCGTCGAAAGGAGTCAACTGATGAGATTCTTGGACGATCTGCATTT
GAGGAAGAAGGCAAAGAAACTGCTGATATAACTCATGCTTTGTCAAAATTGACAGAGCCGGCATCAGTTC
CAATTCATAAATTATCAGTTTCAAATATGGTACACACTGCAAAGAAGAAAATCCGAAAACACAGAGGTGT
AGAGGAGTCACCGCTAAATAATGATGTTCTTAATACTATTCTCCTGTTCTTATTCCCTGATGCTGTTTCT
GAGAAACCATTAGATGGAACTACTTCAACAGATAATAATAATCCTCCATCAGAGAGTGAAGACTATAATC
TCTACAATCAGTTCAAGTCTGCACCATCTGACAGTTTAACATACAAACTGGCTTTGTGTCTCTGTATGAT
CAATTTTTACCATGGAGGGTTGAAAGGAGTGGCACACCTCTGGCAGGAATTTGTTCTTGAAATGCGTTTC
CGATGGGAAAACAACTTTCTGATTCCAGGATTAGCAAGTGGACCCCCAGATCTGAGGTGTTGTTTACTGC
ATCAGAAACTACAGATGTTAAATTGTTGTATTGAAAGAAAGAAGGCACGTGATGAGGGGAAAAAGACAAG
TGCTTCAGATGTCACTAATATATATCCAGGGGATGCTGGAAAAGCAGGAGACCAGTTGGTGCCAGATAAT
CTAAAAGAAACAGATAAGGAAAAGGGAGAGGTAGGAAAATCTTGGGATTCCTGGAGTGACAGCGAAGAAG
AATTTTTTGAATGCCTAAGTGATACTGAAGAACTTAAAGGAAATGGACAAGAGAGTGGCAAGAAAGGAGG
ACCTAAGGAGATGGCAAATTTAAGGCCGGAAGGACGGCTCTATCAGCATGGGAAACTTACACTGCTGCAT
AATGGAGAACCTCTCTACATTCCAGTAACCCAGGAACCAGCACCTATGACAGAAGATCTGCTAGAAGAGC
AGTCTGAAGTTTTAGCTAAATTAGGTACATCGGCAGAGGGGGCTCACCTTCGAGCACGCATGCAGAGTGC
CTGTCTGCTCTCAGATATGGAGTCTTTTAAGGCAGCTAATCCAGGTTGCTCCCTGGAAGATTTTGTGAGG
TGGTATTCACCCCGGGATTATATTGAAGAGGAGGTGATTGATGAAAAGGGCAATGTGGTGCTGAAAGGAG
AACTGAGTGCCCGGATGAAGATTCCAAGCAATATGTGGGTAGAAGCCTGGGAAACAGCTAAGCCAATTCC
TGCTAGAAGGCAAAGGAGACTCTTTGATGATACACGGGAAGCAGAAAAGGTGCTGCACTATCTGGCAATC
CAGAAACCTGCAGACCTTGCTCGGCACCTGTTACCTTGTGTGATTCATGCAGCTGTACTCAAGGTAAAGG
AAGAAGAAAGTCTCGAAAACATTTCTTCAGTTAAGAAGATCATAAAGCAGATAATATCCCATTCCAGTAA
AGTTTTGCACTTCCCCAATCCAGAAGACAAGAAATTGGAAGAAATCATTCACCAGATTACTAATGTGGAA
GCTCTCATTGCCAGAGCTCGGTCACTAAAAGCCAAGTTTGGAACTGAGAAATGTGAACAGGAGGAGGAAA
AGGAAGATCTTGAAAGGTTTGTGAGTTGCCTGCTGGAGCAGCCTGAAGTGTTAGTCACCGGTGCAGGAAG
AGGACATGCTGGCAGGATCATTCACAAGCTGTTTGTGAATGCCCAGAGGCTGACTGAATCTTCTGATGAG
GCTGCAGCTATGACTCCACCAGAGGAGGAATTGAAGAGAATGGGCTCCCCAGAGGAAAGAAGGCAGAACT
CCGTGTCAGACTTCCCACCCCCTGCTGGCCGGGAATTCATTTTGCGCACCACTGTGCCGCGCCCTGCTCC
CTACTCCAAAGCTCTGCCTCAGCGGATGTACAGTGTTCTCACCAAAGAGGACTTTAGACTTGCAGGTGCC
TTTTCATCAGATACTTCCTTCTTCTGA

Translation (988 aa):
MAADSEPESEVFEITDFTTASEWERFISKVEEVLNDWKLIGNSLGKPLEKGIFTSGTWEEKSDEISFADF
KFSVTHHYLVQESTDKEGKDELLEDVVPQSMQDLLGMNNDFPPRAHCLVRWYGLREFVVIAPAAHSDAVL
SESKCNLLLSSVSIALGNTGCQVPLFVQIHHKWRRMYVGECQGPGVRTDFEMVHLRKVPNQYTHLSGLLD
IFKSKIGCPLTPLPPVSIAIRFTYVLQDWQQYFWPQQPPDIDALVGGEVGGLEFGKLPFGACEDPISELH
LATTWPHLTEGIIVDNDVYSDLDPIQAPHWSVRVRKAENPQCLLGDFVTEFFKICRRKESTDEILGRSAF
EEEGKETADITHALSKLTEPASVPIHKLSVSNMVHTAKKKIRKHRGVEESPLNNDVLNTILLFLFPDAVS
EKPLDGTTSTDNNNPPSESEDYNLYNQFKSAPSDSLTYKLALCLCMINFYHGGLKGVAHLWQEFVLEMRF
RWENNFLIPGLASGPPDLRCCLLHQKLQMLNCCIERKKARDEGKKTSASDVTNIYPGDAGKAGDQLVPDN
LKETDKEKGEVGKSWDSWSDSEEEFFECLSDTEELKGNGQESGKKGGPKEMANLRPEGRLYQHGKLTLLH
NGEPLYIPVTQEPAPMTEDLLEEQSEVLAKLGTSAEGAHLRARMQSACLLSDMESFKAANPGCSLEDFVR
WYSPRDYIEEEVIDEKGNVVLKGELSARMKIPSNMWVEAWETAKPIPARRQRRLFDDTREAEKVLHYLAI
QKPADLARHLLPCVIHAAVLKVKEEESLENISSVKKIIKQIISHSSKVLHFPNPEDKKLEEIIHQITNVE
ALIARARSLKAKFGTEKCEQEEEKEDLERFVSCLLEQPEVLVTGAGRGHAGRIIHKLFVNAQRLTESSDE
AAAMTPPEEELKRMGSPEERRQNSVSDFPPPAGREFILRTTVPRPAPYSKALPQRMYSVLTKEDFRLAGA
FSSDTSFF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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