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Report for CCDS54380.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54380.1 Public Homo sapiens 2 MGAT4A 24 110 108 CCDS HistoryNCBI Gene:11320Re-query CCDS DB by CCDS ID:54380.1Re-query CCDS DB by GeneID:11320See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 54380.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000414521.6 ENSP00000404889.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000414521.6Link to Ensembl Protein Viewer:ENSP00000404889.2Re-query CCDS DB by Nucleotide ID:ENST00000414521Re-query CCDS DB by Protein ID:ENSP00000404889
Original member Current member NCBI NM_001160154.2 NP_001153626.1 Accepted alive Link to Nucleotide Sequence:NM_001160154.2Link to Protein Sequence:NP_001153626.1Re-query CCDS DB by Nucleotide ID:NM_001160154Re-query CCDS DB by Protein ID:NP_001153626Link to BLAST:NP_001153626.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153626.1 423 Q9UM21-2 423 100% 0 0

Chromosomal Locations for CCDS 54380.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 98621431 98621505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 98625723 98625835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 98635222 98635288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 98636517 98636595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 98639808 98640001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 98640121 98640228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 98643923 98644053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 98645428 98645542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 98655445 98655520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 98656352 98656465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 98658218 98658264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 98663046 98663179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 98663341 98663359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1272 nt):
ATGAATTACAGTATTACAGTTTCAATAGTCATGGGCATTCCCACAGTGAAGAGAGAAGTTAAATCTTACC
TCATAGAAACTCTTCATTCCCTTATTGATAACCTGTATCCTGAAGAGAAGTTGGACTGTGTTATAGTAGT
CTTCATAGGAGAGACAGATATTGATTATGTACATGGTGTTGTAGCCAACCTGGAGAAAGAATTTTCTAAA
GAAATCAGTTCTGGCTTGGTGGAAGTCATATCACCCCCTGAAAGCTATTATCCTGACTTGACAAACCTAA
AGGAGACATTTGGAGACTCCAAAGAAAGAGTAAGATGGAGAACAAAGCAAAACCTAGATTACTGTTTTCT
AATGATGTATGCTCAAGAAAAGGGCATATATTACATTCAGCTTGAAGATGATATTATTGTCAAACAAAAT
TATTTTAATACCATAAAAAATTTTGCACTTCAACTTTCTTCTGAGGAATGGATGATTCTAGAGTTTTCCC
AGCTGGGCTTCATTGGTAAAATGTTTCAAGCGCCGGATCTTACTCTGATTGTAGAATTCATATTCATGTT
TTACAAGGAGAAACCCATTGATTGGCTCCTGGACCATATTCTCTGGGTGAAAGTCTGCAACCCTGAAAAA
GATGCAAAACATTGTGATAGACAGAAAGCAAATCTGCGAATTCGCTTCAGACCTTCCCTTTTCCAACATG
TTGGTCTGCACTCATCACTATCAGGAAAAATCCAAAAACTCACGGATAAAGATTATATGAAACCATTACT
TCTTAAAATCCATGTAAACCCACCTGCGGAGGTATCTACTTCCTTGAAGGTCTACCAAGGGCATACGCTG
GAGAAAACTTACATGGGAGAGGATTTCTTCTGGGCTATCACACCGATAGCTGGAGACTACATCTTGTTTA
AATTTGATAAACCAGTCAATGTAGAAAGTTATTTGTTCCATAGCGGCAACCAAGAACATCCTGGAGATAT
TCTGCTAAACACAACTGTGGAAGTTTTGCCTTTTAAGAGTGAAGGTTTGGAAATAAGCAAAGAAACCAAA
GACAAACGATTAGAAGATGGCTATTTCAGAATAGGAAAATTTGAGAATGGTGTTGCAGAAGGAATGGTGG
ATCCAAGTCTCAATCCCATTTCAGCCTTTCGACTTTCAGTTATTCAGAATTCTGCTGTTTGGGCCATTCT
TAATGAGCAGAGAGTTTTCTCGGGCTGGTGGCAGAAGTCAAGAGACAAAGCAGAAGGACCTCAGGCACCA
TTGCTGTTTTAA

Translation (423 aa):
MNYSITVSIVMGIPTVKREVKSYLIETLHSLIDNLYPEEKLDCVIVVFIGETDIDYVHGVVANLEKEFSK
EISSGLVEVISPPESYYPDLTNLKETFGDSKERVRWRTKQNLDYCFLMMYAQEKGIYYIQLEDDIIVKQN
YFNTIKNFALQLSSEEWMILEFSQLGFIGKMFQAPDLTLIVEFIFMFYKEKPIDWLLDHILWVKVCNPEK
DAKHCDRQKANLRIRFRPSLFQHVGLHSSLSGKIQKLTDKDYMKPLLLKIHVNPPAEVSTSLKVYQGHTL
EKTYMGEDFFWAITPIAGDYILFKFDKPVNVESYLFHSGNQEHPGDILLNTTVEVLPFKSEGLEISKETK
DKRLEDGYFRIGKFENGVAEGMVDPSLNPISAFRLSVIQNSAVWAILNEQRVFSGWWQKSRDKAEGPQAP
LLF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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