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Report for CCDS54364.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54364.1 Public Homo sapiens 2 ARHGAP25 24 110 108 CCDS HistoryNCBI Gene:9938Re-query CCDS DB by CCDS ID:54364.1Re-query CCDS DB by GeneID:9938See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54364.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000409220.5 ENSP00000386241.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409220.5Link to Ensembl Protein Viewer:ENSP00000386241.1Re-query CCDS DB by Nucleotide ID:ENST00000409220Re-query CCDS DB by Protein ID:ENSP00000386241
Original member Current member NCBI NM_001166276.2 NP_001159748.1 Accepted alive Link to Nucleotide Sequence:NM_001166276.2Link to Protein Sequence:NP_001159748.1Re-query CCDS DB by Nucleotide ID:NM_001166276Re-query CCDS DB by Protein ID:NP_001159748Link to BLAST:NP_001159748.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159748.1 639 P42331-6 639 100% 0 0

Chromosomal Locations for CCDS 54364.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 68775181 68775420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68782233 68782320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68787840 68787956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68807273 68807480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68813287 68813419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68816289 68816362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68817873 68817994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68819123 68819319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68822340 68822872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68825987 68826194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1920 nt):
ATGTCCCTCGGTCAGTCGGCCTGTCTGTTCCTCTCTATAGCTCGGTCAAGGAGTGTGATGACTGGCGAGC
AGATGGCTGCCTTCCATCCATCGTCCACCCCCAACCCGCTGGAGAGGCCCATCAAGATGGGCTGGCTGAA
GAAGCAGAGGTCCATCGTGAAGAACTGGCAGCAGAGGTACTTTGTGCTGAGGGCGCAGCAGCTCTACTAC
TACAAGGATGAAGAGGACACGAAGCCCCAGGGCTGCATGTATCTACCAGGATGTACAATCAAGGAGATCG
CCACAAACCCAGAAGAAGCTGGGAAGTTTGTCTTTGAAATCATTCCAGCCTCATGGGACCAGAATCGCAT
GGGACAGGACTCCTATGTCCTCATGGCCAGCTCTCAGGCGGAGATGGAGGAGTGGGTTAAATTCCTCAGG
AGAGTTGCTGGCACACCCTGTGGAGCAGTGTTTGGCCAGCGCTTGGATGAGACTGTGGCCTATGAACAGA
AATTCGGCCCCCATCTGGTGCCCATCCTGGTGGAGAAATGTGCAGAGTTCATCCTGGAGCACGGCCGGAA
TGAAGAGGGCATCTTCCGTCTGCCTGGGCAGGACAACCTGGTGAAGCAGCTGAGAGACGCTTTTGATGCT
GGGGAGCGGCCCTCCTTTGACAGAGACACAGATGTGCACACTGTGGCTTCCCTGTTAAAGCTCTACCTCC
GAGACCTCCCAGAGCCCGTGGTTCCCTGGAGCCAGTACGAAGGGTTCCTGCTCTGTGGGCAGCTCACGAA
TGCGGATGAGGCAAAGGCTCAGCAGGAGTTGATGAAGCAGCTCTCCATCCTTCCTCGTGACAACTATAGT
CTCCTGAGCTACATCTGCAGGTTCCTACATGAAATACAGCTGAACTGTGCTGTTAACAAGATGAGTGTGG
ACAACCTGGCTACTGTGATTGGTGTGAATCTCATCAGGTCGAAGGTCGAAGACCCTGCCGTGATCATGAG
AGGGACTCCTCAGATCCAAAGAGTGATGACTATGATGATCAGAGACCATGAAGTCCTCTTCCCCAAGTCC
AAGGATATACCCCTGTCACCCCCTGCCCAGAAAAATGACCCCAAGAAAGCTCCAGTGGCCCGAAGCTCTG
TAGGCTGGGATGCCACTGAAGACCTCCGAATTTCTAGGACAGACAGCTTCAGTAGCATGACAAGCGACTC
TGATACAACCAGCCCCACCGGACAGCAGCCGAGCGATGCGTTTCCGGAGGACAGCAGCAAAGTACCCAGG
GAAAAGCCAGGAGACTGGAAAATGCAATCTCGTAAAAGGACTCAAACACTCCCTAACCGGAAATGTTTCT
TGACATCAGCTTTTCAGGGTGCCAACAGCAGCAAAATGGAGATCTTTAAAAATGAATTCTGGTCGCCTTC
CTCAGAGGCTAAGGCAGGGGAAGGGCACAGGAGAACGATGTCTCAAGACTTGCGCCAACTTTCTGACTCC
CAACGGACTTCCACCTACGATAACGTCCCTTCCCTGCCAGGGTCCCCTGGGGAGGAAGCCAGTGCACTCT
CTTCCCAAGCCTGTGACTCCAAGGGAGATACTCTTGCCAGTCCAAACTCTGAAACTGGGCCTGGAAAAAA
GAACTCTGGAGAAGAGGAAATTGATTCTTTGCAGAGGATGGTCCAAGAGCTACGAAAGGAAATAGAAACA
CAGAAGCAAATGTATGAGGAACAGATTAAAAACCTTGAGAAGGAAAATTATGACGTTTGGGCTAAAGTGG
TGAGGCTCAATGAAGAACTGGAGAAGGAAAAGAAGAAGTCTGCAGCCCTAGAGATCAGCCTCCGCAACAT
GGAGCGCTCCCGGGAGGATGTTGAGAAGAGGAACAAGGCCTTGGAAGAAGAAGTCAAGGAATTTGTCAAA
TCCATGAAGGAACCCAAGACCGAGGCTTAA

Translation (639 aa):
MSLGQSACLFLSIARSRSVMTGEQMAAFHPSSTPNPLERPIKMGWLKKQRSIVKNWQQRYFVLRAQQLYY
YKDEEDTKPQGCMYLPGCTIKEIATNPEEAGKFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLR
RVAGTPCGAVFGQRLDETVAYEQKFGPHLVPILVEKCAEFILEHGRNEEGIFRLPGQDNLVKQLRDAFDA
GERPSFDRDTDVHTVASLLKLYLRDLPEPVVPWSQYEGFLLCGQLTNADEAKAQQELMKQLSILPRDNYS
LLSYICRFLHEIQLNCAVNKMSVDNLATVIGVNLIRSKVEDPAVIMRGTPQIQRVMTMMIRDHEVLFPKS
KDIPLSPPAQKNDPKKAPVARSSVGWDATEDLRISRTDSFSSMTSDSDTTSPTGQQPSDAFPEDSSKVPR
EKPGDWKMQSRKRTQTLPNRKCFLTSAFQGANSSKMEIFKNEFWSPSSEAKAGEGHRRTMSQDLRQLSDS
QRTSTYDNVPSLPGSPGEEASALSSQACDSKGDTLASPNSETGPGKKNSGEEEIDSLQRMVQELRKEIET
QKQMYEEQIKNLEKENYDVWAKVVRLNEELEKEKKKSAALEISLRNMERSREDVEKRNKALEEEVKEFVK
SMKEPKTEA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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