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Report for CCDS54353.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54353.1 Public Homo sapiens 2 PREPL 24 110 108 CCDS HistoryNCBI Gene:9581Re-query CCDS DB by CCDS ID:54353.1Re-query CCDS DB by GeneID:9581See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54353.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000409411.6 ENSP00000387095.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000409411.6Link to Ensembl Protein Viewer:ENSP00000387095.2Re-query CCDS DB by Nucleotide ID:ENST00000409411Re-query CCDS DB by Protein ID:ENSP00000387095
Original member Current member EBI ENST00000409957.5 ENSP00000387241.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409957.5Link to Ensembl Protein Viewer:ENSP00000387241.1Re-query CCDS DB by Nucleotide ID:ENST00000409957Re-query CCDS DB by Protein ID:ENSP00000387241
Original member Current member EBI ENST00000541738.5 ENSP00000439626.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000541738.5Link to Ensembl Protein Viewer:ENSP00000439626.1Re-query CCDS DB by Nucleotide ID:ENST00000541738Re-query CCDS DB by Protein ID:ENSP00000439626
Original member Current member NCBI NM_001171613.2 NP_001165084.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001171613.2Link to Protein Sequence:NP_001165084.1Re-query CCDS DB by Nucleotide ID:NM_001171613Re-query CCDS DB by Protein ID:NP_001165084Link to BLAST:NP_001165084.1
Original member Current member NCBI NM_001171617.1 NP_001165088.1 Accepted alive Link to Nucleotide Sequence:NM_001171617.1Link to Protein Sequence:NP_001165088.1Re-query CCDS DB by Nucleotide ID:NM_001171617Re-query CCDS DB by Protein ID:NP_001165088Link to BLAST:NP_001165088.1
Original member Current member NCBI NM_001374277.1 NP_001361206.1 Accepted alive Link to Nucleotide Sequence:NM_001374277.1Link to Protein Sequence:NP_001361206.1Re-query CCDS DB by Nucleotide ID:NM_001374277Re-query CCDS DB by Protein ID:NP_001361206Link to BLAST:NP_001361206.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001165084.1 638 Q4J6C6-4 638 100% 0 0
NP_001165088.1 638 Q4J6C6-4 638 100% 0 0
NP_001361206.1 638 Q4J6C6-4 638 100% 0 0

Chromosomal Locations for CCDS 54353.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 44321356 44321445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 44321827 44321900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 44322731 44322854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 44323262 44323411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 44326712 44326928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 44328937 44329112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 44332459 44332656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 44338351 44338536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 44339147 44339363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 44342417 44342552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 44343745 44343951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 44344520 44344586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 44346268 44346342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1917 nt):
ATGGATGCATTTGAAAAAGTGAGAACAAAATTAGAAACACAGCCACAAGAAGAATATGAAATCATCAATG
TGGAAGTTAAACATGGTGGTTTTGTTTATTACCAAGAAGGTTGTTGCTTGGTTCGTTCCAAAGATGAAGA
AGCAGACAATGATAATTATGAAGTTTTATTCAATTTGGAGGAACTTAAGTTAGACCAGCCCTTCATTGAT
TGTATCAGAGTTGCTCCAGATGAAAAATATGTGGCTGCCAAGATAAGAACTGAAGATTCTGAAGCATCTA
CCTGTGTAATTATAAAGCTCAGCGATCAGCCCGTAATGGAAGCTTCTTTCCCGAATGTGTCCAGTTTTGA
ATGGGTAAAGGACGAGGAAGATGAAGATGTTTTATTCTACACCTTCCAGAGGAACCTTCGCTGTCATGAC
GTATATCGAGCCACTTTTGGTGATAACAAACGTAATGAACGCTTTTACACAGAAAAAGACCCAAGCTACT
TTGTTTTCCTTTATCTTACAAAAGACAGTCGTTTCCTCACCATAAATATTATGAACAAGACTACTTCTGA
AGTGTGGTTGATAGATGGCCTGAGCCCTTGGGACCCACCAGTACTTATCCAGAAGCGAATACATGGGGTC
CTTTACTATGTTGAACACAGAGATGATGAATTATACATTCTCACTAATGTTGGAGAACCTACAGAATTTA
AGCTAATGAGAACAGCGGCTGATACCCCTGCAATTATGAATTGGGATTTATTTTTTACAATGAAGAGAAA
TACAAAAGTGATAGACTTGGACATGTTTAAGGATCACTGTGTTCTATTTCTGAAGCACAGCAATCTCCTT
TATGTTAATGTGATTGGTCTGGCTGATGATTCAGTTCGGTCTCTAAAGCTCCCTCCTTGGGCCTGTGGAT
TCATAATGGATACAAATTCTGACCCAAAGAACTGCCCCTTTCAACTTTGCTCTCCAATACGTCCCCCAAA
ATATTACACATACAAGTTTGCAGAAGGCAAACTGTTTGAGGAAACTGGGCATGAAGACCCAATCACAAAG
ACTAGTCGCGTTTTACGTCTAGAAGCCAAAAGCAAGGATGGAAAATTAGTGCCAATGACTGTTTTCCACA
AAACTGACTCTGAGGACTTGCAGAAGAAACCTCTCTTGGTACATGTATATGGAGCTTATGGAATGGATTT
GAAAATGAATTTCAGGCCTGAGAGGCGGGTCCTGGTGGATGATGGATGGATATTAGCATACTGCCATGTT
CGAGGTGGTGGTGAGTTAGGCCTCCAGTGGCACGCTGATGGCCGCCTAACTAAAAAACTCAATGGCCTTG
CTGATTTAGAGGCTTGCATTAAGACGCTTCATGGCCAAGGCTTTTCTCAGCCAAGTCTAACAACCCTGAC
TGCTTTCAGTGCTGGAGGGGTGCTTGCAGGAGCATTGTGTAATTCTAATCCAGAGCTGGTGAGAGCGGTG
ACTTTGGAGGCACCTTTCTTGGATGTTCTCAACACCATGATGGACACTACACTTCCTCTGACATTAGAAG
AATTAGAAGAATGGGGGAATCCTTCATCTGATGAAAAACACAAGAACTACATAAAACGTTACTGTCCCTA
TCAAAATATTAAACCTCAGCATTATCCTTCAATTCACATAACGGCATATGAAAACGATGAACGGGTACCT
CTGAAAGGAATTGTAAGTTATACTGAGAAACTCAAGGAAGCCATCGCGGAGCATGCTAAGGACACAGGTG
AAGGCTATCAGACCCCTAATATTATTCTAGATATTCAGCCTGGAGGCAATCATGTAATTGAGGATTCTCA
CAAAAAGATTACAGCCCAAATTAAATTCCTGTACGAGGAACTTGGACTTGACAGCACCAGTGTTTTCGAG
GATCTTAAGAAATACCTGAAATTCTGA

Translation (638 aa):
MDAFEKVRTKLETQPQEEYEIINVEVKHGGFVYYQEGCCLVRSKDEEADNDNYEVLFNLEELKLDQPFID
CIRVAPDEKYVAAKIRTEDSEASTCVIIKLSDQPVMEASFPNVSSFEWVKDEEDEDVLFYTFQRNLRCHD
VYRATFGDNKRNERFYTEKDPSYFVFLYLTKDSRFLTINIMNKTTSEVWLIDGLSPWDPPVLIQKRIHGV
LYYVEHRDDELYILTNVGEPTEFKLMRTAADTPAIMNWDLFFTMKRNTKVIDLDMFKDHCVLFLKHSNLL
YVNVIGLADDSVRSLKLPPWACGFIMDTNSDPKNCPFQLCSPIRPPKYYTYKFAEGKLFEETGHEDPITK
TSRVLRLEAKSKDGKLVPMTVFHKTDSEDLQKKPLLVHVYGAYGMDLKMNFRPERRVLVDDGWILAYCHV
RGGGELGLQWHADGRLTKKLNGLADLEACIKTLHGQGFSQPSLTTLTAFSAGGVLAGALCNSNPELVRAV
TLEAPFLDVLNTMMDTTLPLTLEELEEWGNPSSDEKHKNYIKRYCPYQNIKPQHYPSIHITAYENDERVP
LKGIVSYTEKLKEAIAEHAKDTGEGYQTPNIILDIQPGGNHVIEDSHKKITAQIKFLYEELGLDSTSVFE
DLKKYLKF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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