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Report for CCDS54223.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54223.1 Public Homo sapiens 19 ZNF44 24 110 108 CCDS HistoryNCBI Gene:51710Re-query CCDS DB by CCDS ID:54223.1Re-query CCDS DB by GeneID:51710See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54223.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000356109.10 ENSP00000348419.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000356109.10Link to Ensembl Protein Viewer:ENSP00000348419.5Re-query CCDS DB by Nucleotide ID:ENST00000356109Re-query CCDS DB by Protein ID:ENSP00000348419
Original member Current member NCBI NM_001164276.2 NP_001157748.1 Accepted alive Link to Nucleotide Sequence:NM_001164276.2Link to Protein Sequence:NP_001157748.1Re-query CCDS DB by Nucleotide ID:NM_001164276Re-query CCDS DB by Protein ID:NP_001157748Link to BLAST:NP_001157748.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157748.1 663 P15621-1 663 100% 0 0

Chromosomal Locations for CCDS 54223.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 12272407 12274063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12274973 12275033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12275956 12276082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12293232 12293375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12294692 12294694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1992 nt):
ATGGCCCTGTGTTATGGAACTTTCTGGGGCTACCCTAAGATGCTGGAAGCTGCCAATCTCATGGAGGGCC
TAGTGGATATCGGCCCTTGGGTCACTCTTCCCAGAGGACAGCCTGAGGTGTTGGAGTGGGGCCTCCCAAA
GGATCAGGACTCAGTGGCCTTTGAGGATGTGGCTGTGAACTTCACCCATGAGGAGTGGGCTTTGCTGGGT
CCATCACAGAAGAATCTCTACAGAGATGTGATGCGAGAAACCATTAGGAACCTGAACTGTATAGGAATGA
AATGGGAAAACCAGAACATTGATGATCAGCACCAAAATCTCAGGAGAAATCCAAGGTGTGATGTGGTAGA
GAGATTTGGTAAAAGTAAAGATGGTAGTCAGTGTGGAGAAACCTTAAGCCAGATTCGAAATAGTATTGTA
AACAAGAACACTCCCGCCAGAGTAGATGCATGTGGAAGCAGTGTGAATGGAGAAGTCATAATGGGTCATT
CATCCCTGAATTGCTACATCAGAGTTGATACTGGACACAAACACCGGGAGTGTCATGAATATGCAGAGAA
GTCATATACACATAAGCAGTGTGGGAAAGGCTTAAGTTATCGCCACTCCTTTCAAACATGTGAAAGGCCT
CACACTGGAAAGAAACCCTATGATTGTAAGGAATGTGGAAAAACCTTCAGTTCTCCTGGAAACCTTCGAA
GACATATGGTAGTAAAAGGTGGAGATGGACCTTATAAATGTGAATTGTGTGGGAAAGCCTTTTTTTGGCC
CAGTTTATTACGTATGCATGAAAGAACTCACACTGGAGAGAAACCATATGAATGTAAGCAGTGTTCTAAA
GCCTTCCCTGTTTACAGTTCCTATCTAAGACATGAAAAAATACACACTGGGGAGAAACCGTATGAATGTA
AGCAGTGTTCTAAAGCCTTCCCTGATTACAGTTCATATCTAAGACATGAAAGAACTCACACTGGAGAGAA
ACCCTACAAATGTAAACAATGTGGGAAAGCCTTCAGTGTTTCCGGTTCCCTTCGAGTACATGAAAGAATT
CACACTGGAGAGAAACCCTATACATGTAAACAGTGTGGGAAAGCGTTTTGTCATCTTGGAAGCTTTCAAA
GACACATGATAATGCACAGTGGAGATGGACCTCATAAATGTAAGATATGTGGGAAAGGCTTTGATTTTCC
TGGTTCAGCACGAATTCATGAAGGAACTCACACTCTAGAGAAACCCTATGAATGTAAGCAATGTGGGAAA
TTGTTATCTCATCGCTCAAGCTTTCGAAGACACATGATGGCACACACTGGAGATGGCCCTCATAAATGCA
CAGTATGTGGGAAAGCCTTTGATTCTCCTAGTGTATTTCAAAGACATGAAAGGACTCACACTGGAGAGAA
ACCCTATGAATGCAAGCAATGTGGGAAAGCCTTCCGTACTTCCAGTTCCCTTCGAAAACATGAAACAACA
CACACTGGAGAGCAACCCTATAAATGTAAATGTGGAAAAGCTTTTAGTGATTTATTTTCCTTTCAAAGTC
ATGAAACAACACACAGTGAAGAGGAGCCTTATGAATGTAAGGAGTGTGGGAAAGCATTTAGTTCTTTTAA
ATACTTTTGTCGCCATGAAAGGACTCACAGTGAAGAAAAATCTTATGAGTGTCAAATTTGTGGCAAAGCC
TTCAGTCGTTTCAGTTACTTAAAAACTCATGAAAGGACTCACACGGCAGAGAAGCCATATGAATGTAAGC
AATGCAGGAAAGCATTCTTTTGGCCCTCTTTCCTTCTAAGACATGAAAGGACTCACACTGGAGAAAGACC
CTATGAATGTAAACACTGTGGTAAAGCCTTCAGTCGTTCCAGTTTCTGTCGAGAACATGAAAGAACTCAC
ACTGGAGAGAAGCCCTATGAATGTAAGGAATGTGGGAAAGCCTTCAGTTCTCTCAGTTCCTTTAATAGAC
ATAAAAGGACACACTGGAAGGATATTCTATAA

Translation (663 aa):
MALCYGTFWGYPKMLEAANLMEGLVDIGPWVTLPRGQPEVLEWGLPKDQDSVAFEDVAVNFTHEEWALLG
PSQKNLYRDVMRETIRNLNCIGMKWENQNIDDQHQNLRRNPRCDVVERFGKSKDGSQCGETLSQIRNSIV
NKNTPARVDACGSSVNGEVIMGHSSLNCYIRVDTGHKHRECHEYAEKSYTHKQCGKGLSYRHSFQTCERP
HTGKKPYDCKECGKTFSSPGNLRRHMVVKGGDGPYKCELCGKAFFWPSLLRMHERTHTGEKPYECKQCSK
AFPVYSSYLRHEKIHTGEKPYECKQCSKAFPDYSSYLRHERTHTGEKPYKCKQCGKAFSVSGSLRVHERI
HTGEKPYTCKQCGKAFCHLGSFQRHMIMHSGDGPHKCKICGKGFDFPGSARIHEGTHTLEKPYECKQCGK
LLSHRSSFRRHMMAHTGDGPHKCTVCGKAFDSPSVFQRHERTHTGEKPYECKQCGKAFRTSSSLRKHETT
HTGEQPYKCKCGKAFSDLFSFQSHETTHSEEEPYECKECGKAFSSFKYFCRHERTHSEEKSYECQICGKA
FSRFSYLKTHERTHTAEKPYECKQCRKAFFWPSFLLRHERTHTGERPYECKHCGKAFSRSSFCREHERTH
TGEKPYECKECGKAFSSLSSFNRHKRTHWKDIL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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