CCDS
Home
FTP
Process
Releases & Statistics
Collaborators
EBI
HGNC
MGI
NCBI
Contact Us
email CCDS
Genome Displays Related Resources
Gene
HomoloGene
MANE
RefSeq
|
![](/corehtml/transparent.gif) |
Report for CCDS5419.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
5419.1 |
Public |
Homo sapiens |
7 |
CPVL |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:54504](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:5419.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:54504](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 7 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 5419.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000265394.10 |
ENSP00000265394.5 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000265394.10](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000265394.5](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000265394](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000265394](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000396276.7 |
ENSP00000379572.3 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000396276.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000379572.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000396276](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000379572](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000409850.5 |
ENSP00000387164.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000409850.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000387164.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000409850](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000387164](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001348052.1 |
NP_001334981.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001348052.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001334981.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001348052](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001334981](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001334981.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001348054.1 |
NP_001334983.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001348054.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001334983.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001348054](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001334983](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001334983.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001371255.1 |
NP_001358184.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001371255.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001358184.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001371255](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001358184](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001358184.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001371256.1 |
NP_001358185.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001371256.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001358185.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001371256](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001358185](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001358185.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001371257.1 |
NP_001358186.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001371257.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001358186.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001371257](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001358186](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001358186.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001371258.1 |
NP_001358187.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001371258.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001358187.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001371258](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001358187](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001358187.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001371260.1 |
NP_001358189.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001371260.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001358189.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001371260](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001358189](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001358189.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001371261.1 |
NP_001358190.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001371261.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001358190.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001371261](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001358190](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001358190.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001371262.1 |
NP_001358191.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001371262.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001358191.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001371262](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001358191](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001358191.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001371263.1 |
NP_001358192.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001371263.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001358192.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001371263](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001358192](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001358192.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_019029.3 |
NP_061902.2 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_019029.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_061902.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_019029](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_061902](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_061902.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_031311.5 |
NP_112601.3 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_031311.5](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_112601.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_031311](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_112601](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_112601.3](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 5419.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1431 nt): ATGGTTGGTGCCATGTGGAAGGTGATTGTTTCGCTGGTCCTGTTGATGCCTGGCCCCTGTGATGGGCTGT TTCGCTCCCTATACAGAAGTGTTTCCATGCCACCTAAGGGAGACTCAGGACAGCCATTATTTCTCACCCC TTACATTGAAGCTGGGAAGATCCAAAAAGGAAGAGAATTGAGTTTGGTCGGCCCTTTCCCAGGACTGAAC ATGAAGAGTTATGCCGGCTTCCTCACCGTGAATAAGACTTACAACAGCAACCTCTTCTTCTGGTTCTTCC CAGCTCAGATACAGCCAGAAGATGCCCCAGTAGTTCTCTGGCTACAGGGTGGGCCGGGAGGTTCATCCAT GTTTGGACTCTTTGTGGAACATGGGCCTTATGTTGTCACAAGTAACATGACCTTGCGTGACAGAGACTTC CCCTGGACCACAACGCTCTCCATGCTTTACATTGACAATCCAGTGGGCACAGGCTTCAGTTTTACTGATG ATACCCACGGATATGCAGTCAATGAGGACGATGTAGCACGGGATTTATACAGTGCACTAATTCAGTTTTT CCAGATATTTCCTGAATATAAAAATAATGACTTTTATGTCACTGGGGAGTCTTATGCAGGGAAATATGTG CCAGCCATTGCACACCTCATCCATTCCCTCAACCCTGTGAGAGAGGTGAAGATCAACCTGAACGGAATTG CTATTGGAGATGGATATTCTGATCCCGAATCAATTATAGGGGGCTATGCAGAATTCCTGTACCAAATTGG CTTGTTGGATGAGAAGCAAAAAAAGTACTTCCAGAAGCAGTGCCATGAATGCATAGAACACATCAGGAAG CAGAACTGGTTTGAGGCCTTTGAAATACTGGATAAACTACTAGATGGCGACTTAACAAGTGATCCTTCTT ACTTCCAGAATGTTACAGGATGTAGTAATTACTATAACTTTTTGCGGTGCACGGAACCTGAGGATCAGCT TTACTATGTGAAATTTTTGTCACTCCCAGAGGTGAGACAAGCCATCCACGTGGGGAATCAGACTTTTAAT GATGGAACTATAGTTGAAAAGTACTTGCGAGAAGATACAGTACAGTCAGTTAAGCCATGGTTAACTGAAA TCATGAATAATTATAAGGTTCTGATCTACAATGGCCAACTGGACATCATCGTGGCAGCTGCCCTGACAGA GCGCTCCTTGATGGGCATGGACTGGAAAGGATCCCAGGAATACAAGAAGGCAGAAAAAAAAGTTTGGAAG ATCTTTAAATCTGACAGTGAAGTGGCTGGTTACATCCGGCAAGCGGGTGACTTCCATCAGGTAATTATTC GAGGTGGAGGACATATTTTACCCTATGACCAGCCTCTGAGAGCTTTTGACATGATTAATCGATTCATTTA TGGAAAAGGATGGGATCCTTATGTTGGATAA
Translation (476 aa): MVGAMWKVIVSLVLLMPGPCDGLFRSLYRSVSMPPKGDSGQPLFLTPYIEAGKIQKGRELSLVGPFPGLN MKSYAGFLTVNKTYNSNLFFWFFPAQIQPEDAPVVLWLQGGPGGSSMFGLFVEHGPYVVTSNMTLRDRDF PWTTTLSMLYIDNPVGTGFSFTDDTHGYAVNEDDVARDLYSALIQFFQIFPEYKNNDFYVTGESYAGKYV PAIAHLIHSLNPVREVKINLNGIAIGDGYSDPESIIGGYAEFLYQIGLLDEKQKKYFQKQCHECIEHIRK QNWFEAFEILDKLLDGDLTSDPSYFQNVTGCSNYYNFLRCTEPEDQLYYVKFLSLPEVRQAIHVGNQTFN DGTIVEKYLREDTVQSVKPWLTEIMNNYKVLIYNGQLDIIVAAALTERSLMGMDWKGSQEYKKAEKKVWK IFKSDSEVAGYIRQAGDFHQVIIRGGGHILPYDQPLRAFDMINRFIYGKGWDPYVG
|