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Report for CCDS54105.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54105.1 Public Homo sapiens 17 CCT6B 24 110 108 CCDS HistoryNCBI Gene:10693Re-query CCDS DB by CCDS ID:54105.1Re-query CCDS DB by GeneID:10693See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54105.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000436961.7 ENSP00000400917.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000436961.7Link to Ensembl Protein Viewer:ENSP00000400917.3Re-query CCDS DB by Nucleotide ID:ENST00000436961Re-query CCDS DB by Protein ID:ENSP00000400917
Original member Current member NCBI NM_001193530.2 NP_001180459.1 Accepted alive Link to Nucleotide Sequence:NM_001193530.2Link to Protein Sequence:NP_001180459.1Re-query CCDS DB by Nucleotide ID:NM_001193530Re-query CCDS DB by Protein ID:NP_001180459Link to BLAST:NP_001180459.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001180459.1 485 Q92526-2 485 100% 0 0

Chromosomal Locations for CCDS 54105.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 34928048 34928117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34928962 34929034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34930949 34931051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34932367 34932500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34939183 34939330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34939617 34939713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34940539 34940621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34942484 34942643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34942796 34942906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34951950 34952053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34954426 34954599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34959587 34959650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34961257 34961393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1458 nt):
ATGGCTGCGATAAAGGCCGTCAACTCCAAGGCTGAGGTGGCGCGGGCCCGGGCAGCTTTGGCTGTCAATA
TATGCGCCGCCCGAGGGCTGCAGGATGTGCTGCGGACCAACTTGGGTCCTAAAGGCACCATGAAAATGCT
TGTTTCTGGTGCAGGTGACATCAAACTCACCAAAGATGGCAATGTGCTGCTCGATGAGATGGGCCTGCAC
CCTAGAATAATAGCTGAAGGATTTGAAGCTGCAAAGATAAAAGCACTTGAAGTTTTGGAGGAAGTTAAAG
TGACAAAGGAGATGAAAAGAAAAATCCTCTTAGATGTAGCTAGAACATCATTACAAACTAAAGTTCATGC
TGAACTGGCTGATGTCTTAACAGAGGTTGTGGTGGATTCTGTTTTGGCTGTTAGAAGACCAGGTTACCCT
ATTGATCTCTTCATGGTAGAAATAATGGAGATGAAGCATAAATTAGGAACAGATACAAAGTTGATCCAAG
GATTAGTTTTGGATCATGGTGCCCGTCATCCAGATATGAAGAAGCGAGTAGAAGATGCATTTATCCTTAT
TTGCAACGTTTCACTGGAATATGAAAAAACAGAGGTGAACTCTGGTTTCTTTTATAAGACTGCAGAAGAG
AAAGAGAAATTGGTAAAAGCTGAAAGAAAATTTATTGAAGATAGAGTACAAAAAATAATAGACCTGAAGG
ACAAAGTCTGTGCTCAGTCAAATAAAGGATTTGTCGTCATTAATCAAAAGGGAATTGATCCATTTTCCTT
AGATTCTCTTGCAAAACATGGAATAGTAGCTCTTCGCAGAGCAAAAAGAAGAAATATGGAAAGACTCTCT
CTTGCTTGTGGTGGAATGGCCGTGAATTCTTTTGAAGATCTCACTGTAGATTGCTTGGGACATGCTGGTC
TTGTGTATGAGTATACATTAGGTGAAGAAAAGTTCACTTTTATTGAGGAGTGTGTTAACCCTTGCTCTGT
TACCTTGTTGGTTAAAGGACCAAATAAGCATACTCTCACACAAGTCAAGGATGCCATAAGAGATGGACTT
CGTGCTATCAAAAATGCCATTGAAGATGGTTGTATGGTTCCTGGAGCTGGTGCAATTGAAGTGGCAATGG
CTGAAGCTCTTGTTACATATAAGAACAGTATAAAAGGAAGAGCTCGTCTTGGAGTCCAAGCTTTTGCTGA
TGCCTTACTCATTATTCCCAAGGTTCTTGCTCAGAATGCTGGTTATGACCCACAGGAAACATTAGTAAAA
GTTCAGGCTGAGCATGTCGAGTCAAAACAACTTGTGGGCGTAGATTTGAATACAGGTGAGCCAATGGTAG
CAGCAGATGCAGGAGTTTGGGATAATTATTGTGTAAAAAAACAACTTCTTCACTCTTGCACAGTGATTGC
CACCAACATTCTCCTGGTTGATGAAATTATGCGAGCTGGGATGTCTTCTCTCAAATGA

Translation (485 aa):
MAAIKAVNSKAEVARARAALAVNICAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLDEMGLH
PRIIAEGFEAAKIKALEVLEEVKVTKEMKRKILLDVARTSLQTKVHAELADVLTEVVVDSVLAVRRPGYP
IDLFMVEIMEMKHKLGTDTKLIQGLVLDHGARHPDMKKRVEDAFILICNVSLEYEKTEVNSGFFYKTAEE
KEKLVKAERKFIEDRVQKIIDLKDKVCAQSNKGFVVINQKGIDPFSLDSLAKHGIVALRRAKRRNMERLS
LACGGMAVNSFEDLTVDCLGHAGLVYEYTLGEEKFTFIEECVNPCSVTLLVKGPNKHTLTQVKDAIRDGL
RAIKNAIEDGCMVPGAGAIEVAMAEALVTYKNSIKGRARLGVQAFADALLIIPKVLAQNAGYDPQETLVK
VQAEHVESKQLVGVDLNTGEPMVAADAGVWDNYCVKKQLLHSCTVIATNILLVDEIMRAGMSSLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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