NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS54087.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54087.1 Public Homo sapiens 17 RANGRF 24 110 108 CCDS HistoryNCBI Gene:29098Re-query CCDS DB by CCDS ID:54087.1Re-query CCDS DB by GeneID:29098See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54087.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000439238.3 ENSP00000413190.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000439238.3Link to Ensembl Protein Viewer:ENSP00000413190.3Re-query CCDS DB by Nucleotide ID:ENST00000439238Re-query CCDS DB by Protein ID:ENSP00000413190
Original member Current member NCBI NM_001177802.2 NP_001171273.1 Accepted alive Link to Nucleotide Sequence:NM_001177802.2Link to Protein Sequence:NP_001171273.1Re-query CCDS DB by Nucleotide ID:NM_001177802Re-query CCDS DB by Protein ID:NP_001171273Link to BLAST:NP_001171273.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171273.1 165 Q9HD47-3 165 100% 0 0

Chromosomal Locations for CCDS 54087.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 8288789 8288865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8288956 8289072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8289258 8289561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (498 nt):
ATGGAGCCCACGAGAGACTGCCCGCTGTTCGGGGGCGCCTTTTCCGCCATCCTCCCCATGGGGGCCATTG
ACGTAAGCGACCTCCGACCGGTCCCGGACAATCAAGAAGTTTTCTGCCATCCCGTGACGGACCAGAGCCT
GATAGTGGAACTTCTCGAGCTGCAGGCCCACGTACGGGGCGAAGCGGCTGCGCGGTACCACTTTGAGGAT
GTTGGTGGCGTGCAGGGGGCTAGGGCTGTCCATGTGGAGTCTGTTCAGCCTCTCAGTTTGGAGAACCTGG
CCCTGAGGGGCCGCTGTCAAGAAGCCTGGGTCCTCTCTGGCAAGCAGCAGATAGCTAAGGAAAACCAGCA
GGTGAGGGCCCGAGAGTGTGTAATGTCCTGGAAGGGCGGTAGCGGGGACGCAGAGATCCAGGTAAGCATC
CTGACTCTGATCCCCTTAGGTAGCAAAGGACGTGACACTTCATCAGGCCTTGCTGAGGCTGCCCCAGTAC
CAGACTGA

Translation (165 aa):
MEPTRDCPLFGGAFSAILPMGAIDVSDLRPVPDNQEVFCHPVTDQSLIVELLELQAHVRGEAAARYHFED
VGGVQGARAVHVESVQPLSLENLALRGRCQEAWVLSGKQQIAKENQQVRARECVMSWKGGSGDAEIQVSI
LTLIPLGSKGRDTSSGLAEAAPVPD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH