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Report for CCDS54008.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54008.1 Public Homo sapiens 16 TOX3 24 110 108 CCDS HistoryNCBI Gene:27324Re-query CCDS DB by CCDS ID:54008.1Re-query CCDS DB by GeneID:27324See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54008.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000407228.7 ENSP00000385705.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000407228.7Link to Ensembl Protein Viewer:ENSP00000385705.3Re-query CCDS DB by Nucleotide ID:ENST00000407228Re-query CCDS DB by Protein ID:ENSP00000385705
Original member Current member NCBI NM_001146188.2 NP_001139660.1 Accepted alive Link to Nucleotide Sequence:NM_001146188.2Link to Protein Sequence:NP_001139660.1Re-query CCDS DB by Nucleotide ID:NM_001146188Re-query CCDS DB by Protein ID:NP_001139660Link to BLAST:NP_001139660.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139660.1 571 O15405-2 571 100% 0 0

Chromosomal Locations for CCDS 54008.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 52439225 52439968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 52444276 52444356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 52445994 52446221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 52450277 52450546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 52463934 52464185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 52468509 52468574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 52519406 52519480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1716 nt):
ATGAAGTGCCAACCTCGCTCGGGAGCCAGGCGCATTGAGGAGAGACTTCATTACCTGATAACTACCTATC
TGAAATTTGGAAATAATAATAACTATATGAATATGGCTGAGGCGAACAATGCGTTCTTCGCTGCCAGTGA
GACATTCCACACACCAAGCCTTGGGGACGAGGAATTCGAAATTCCACCAATCACGCCTCCTCCAGAGTCA
GACCCTGCCCTAGGCATGCCGGATGTACTGCTACCCTTTCAAGCCCTCAGCGATCCATTGCCTTCCCAGG
GAAGTGAATTCACACCCCAGTTTCCCCCTCAAAGCCTGGACCTCCCTTCCATTACAATCTCAAGAAATCT
CGTGGAACAAGATGGCGTGCTTCATAGCAGTGGGTTGCATATGGATCAGAGCCACACACAAGTGTCCCAG
TACCGGCAGGATCCCTCCCTGATCATGCGGTCCATCGTCCACATGACCGATGCTGCGCGTTCTGGGGTCA
TGCCTCCTGCCCAGCTCACCACCATCAACCAGTCTCAGCTCAGCGCCCAGTTGGGGTTGAATTTGGGAGG
TGCCAGTATGCCTCACACATCTCCTTCACCTCCAGCAAGCAAATCAGCCACTCCCTCCCCTTCCAGCTCC
ATCAATGAAGAGGATGCTGATGAAGCCAACAGAGCCATTGGAGAGAAAAGAGCTGCTCCAGACTCTGGCA
AGAAGCCCAAGACTCCAAAGAAAAAGAAAAAGAAAGATCCCAATGAGCCACAGAAGCCAGTGTCAGCATA
TGCCCTGTTTTTCAGAGACACACAGGCTGCAATTAAAGGTCAAAACCCCAATGCAACCTTTGGAGAGGTC
TCAAAAATTGTAGCATCTATGTGGGACAGCCTTGGAGAAGAACAAAAGCAGGTATATAAAAGGAAAACAG
AAGCTGCCAAAAAAGAATACCTGAAGGCCCTGGCGGCATACAGGGCCAGCCTCGTTTCTAAGGCTGCTGC
TGAGTCAGCAGAAGCCCAGACCATCCGTTCTGTTCAGCAGACCCTGGCGTCGACCAATCTAACATCCTCT
CTCCTTCTCAACACTCCACTGTCTCAACATGGAACAGTGTCAGCATCACCTCAGACTCTCCAGCAATCCC
TCCCTAGGTCAATCGCTCCCAAACCCTTAACCATGAGACTCCCCATGAACCAGATTGTCACATCAGTCAC
CATTGCAGCCAACATGCCCTCGAACATTGGGGCTCCACTGATAAGCTCCATGGGAACGACCATGGTTGGC
TCAGCACCCTCCACCCAAGTGAGTCCTTCGGTGCAAACCCAGCAGCATCAGATGCAATTGCAGCAGCAGC
AGCAGCAGCAACAACAACAGATGCAACAGATGCAGCAGCAGCAACTCCAGCAGCACCAAATGCATCAGCA
AATCCAGCAGCAGATGCAGCAGCAGCATTTCCAGCACCACATGCAGCAGCACCTGCAGCAGCAGCAGCAG
CATCTCCAGCAGCAAATTAATCAACAGCAGCTGCAGCAGCAGCTGCAGCAGCGCCTCCAGCTGCAGCAGC
TGCAACACATGCAGCACCAGTCTCAGCCTTCTCCTCGGCAGCACTCCCCTGTCGCCTCTCAGATAACATC
CCCCATCCCTGCCATCGGGAGCCCCCAGCCAGCCTCTCAGCAGCACCAGTCGCAAATACAGTCTCAGACA
CAGACTCAAGTATTATCGCAGGTCAGTATTTTCTGA

Translation (571 aa):
MKCQPRSGARRIEERLHYLITTYLKFGNNNNYMNMAEANNAFFAASETFHTPSLGDEEFEIPPITPPPES
DPALGMPDVLLPFQALSDPLPSQGSEFTPQFPPQSLDLPSITISRNLVEQDGVLHSSGLHMDQSHTQVSQ
YRQDPSLIMRSIVHMTDAARSGVMPPAQLTTINQSQLSAQLGLNLGGASMPHTSPSPPASKSATPSPSSS
INEEDADEANRAIGEKRAAPDSGKKPKTPKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEV
SKIVASMWDSLGEEQKQVYKRKTEAAKKEYLKALAAYRASLVSKAAAESAEAQTIRSVQQTLASTNLTSS
LLLNTPLSQHGTVSASPQTLQQSLPRSIAPKPLTMRLPMNQIVTSVTIAANMPSNIGAPLISSMGTTMVG
SAPSTQVSPSVQTQQHQMQLQQQQQQQQQQMQQMQQQQLQQHQMHQQIQQQMQQQHFQHHMQQHLQQQQQ
HLQQQINQQQLQQQLQQRLQLQQLQHMQHQSQPSPRQHSPVASQITSPIPAIGSPQPASQQHQSQIQSQT
QTQVLSQVSIF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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